Phocoenobacter atlanticus: KGI96_06610
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Entry
KGI96_06610 CDS
T07499
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KGI96_06610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
patl03400
]
KGI96_06610 (mfd)
Enzymes [BR:
patl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KGI96_06610 (mfd)
DNA repair and recombination proteins [BR:
patl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KGI96_06610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
QVE20041
LinkDB
All DBs
Position
complement(1397400..1400870)
Genome browser
AA seq
1156 aa
AA seq
DB search
MTFNLHFKLPQITEKHQDHQILGNLVGHSDTLAIAEAAQQFNGVSIVVTPDIQTALRLES
SLPQFSSLPVQLFPDWETLPYDNFSPHQEIISNRLSALFQLQQGNKQIFLLPIHTLLQKI
CPPSYLGNNVFLINKGDRFSISQLRLQLENAGYRGVEQVLEYGEYAVRGSILDLYPMGSD
EPFRLDFFDDEIDSIRTFDVDTQRTIQEIEKIDLLPAHEFPTDEQGIEFFRKKFRETFAE
IRREPEHIYQQVSKGVLNAGIEYWQPLFFEEMASLFDYLPQNSLFITFDKIAEKAELFQK
DTQKRFENHRVDPMRPLLEPSELWFKMDEINRHLKNYPRLTLTTEKIRQSVAKTNANLTA
LPNVAITSSQKNIFKNFEDFYTNFNGKILFSVETQGRRETLLDLIAPLNIKPKQIYSLDE
INEPFSLMIGSLDQGFILEQKNSENVSGQFLAIICETDLLGEKVHQKSRREKNRSTVNPD
TVVRNLAELKIGQPVVHLENGVGRYNGLVTLDTGGITAEYLILHYAGDSKLYVPVSSLHL
ISRYIGGTDDNAPLHKLGSEAWAKSRQKAAEKIRDVAAELLDVYAKRETKKGFAYQYDKE
LYKQFSATFPFEETEDQQLAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRATFLAVMN
SKQVAVLVPTTLLAQQHFENFKDRFADFPVNVEMISRFKTAKEQKVILEKVADGQVDILV
GTHKLLQDDVKFKDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMAFN
GIRDLSIIASPPARRLSTKTFVRQNDESVIKEAVLREILRGGQVYYLHNDVATIENCADK
LAELVPEARIVIGHGQMRERDLERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERA
DKFGLAQLHQLRGRVGRSHHQAYAYLLTPPIKTLTKDAKKRLEALETLDSLGAGFMLATQ
DLEIRGAGELLGSEQSGQISSIGFSLYMDLLENAVQALKDGREPTLDEITQQQVEIELRV
SALLPDDYVPDVNMRLSFYKRIASAENSRELKDLKIELIDRFGLLPKATKNLFQITQLRH
IAKQLELKKVEAGINGGYLEFKETATPDPMMFLALIQSDKQVYRFDGPFKFKFNTTLKET
DERLTFVTQLLNNITD
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaatttacactttaagttaccccagatcacagaaaaacatcaagatcatcaa
atattaggcaatctcgttggacattccgatactcttgcaatcgcagaagccgcacagcaa
tttaatggtgtaagcatcgttgtgacaccagatattcaaactgcattgcgtttagaaagc
agtttgccacaatttagttcgctacctgttcagctttttcctgactgggaaaccttacct
tatgataatttttcgcctcatcaagagattatttccaaccgcttatctgcactatttcaa
cttcaacagggcaacaagcagatttttttactgcctatccacaccttgctacaaaaaatt
tgtccgccaagttatttaggtaataacgtctttttaattaacaaaggcgaccgtttttca
attagtcaattacgcttacagcttgaaaatgcaggctatcggggtgttgaacaagtttta
gaatatggcgaatatgcagtgcgtggttcaattctcgacctgtatccaatgggaagtgat
gagccatttagattagatttttttgatgatgaaattgattcaattcgcacctttgatgtg
gatacgcaacgtacgattcaagaaattgaaaaaattgatttattacctgctcacgaattt
ccaaccgatgagcaaggcattgaatttttcagaaaaaaattccgagaaacttttgcagaa
attcgtcgagagcctgaacatatttatcagcaagtaagcaaaggtgtgttaaatgcgggg
attgaatattggcagccactcttttttgaagaaatggcatcactgtttgattatcttccc
caaaatagcctgtttattacttttgataaaattgctgaaaaagccgagttatttcaaaag
gatactcaaaaacgctttgaaaatcatcgtgttgacccaatgcgaccattacttgaacct
agcgaattgtggtttaaaatggacgagatcaaccgtcatttaaaaaattatccacgttta
acgctaaccacagaaaaaatccgtcaatctgttgcaaaaaccaatgcaaatttgaccgct
ttacctaatgttgcgataacatctagccaaaaaaatatctttaaaaattttgaagatttt
tacacaaattttaacggcaaaattctcttttcagtggaaacacaagggcgacgtgaaacc
ttactcgatttgatcgcaccgttaaatatcaaaccaaaacaaatctattccctcgatgaa
atcaatgaaccatttagcttaatgattggctcattagatcaaggttttatcttagaacaa
aaaaatagtgaaaatgtaagcggtcaatttttagcaataatttgcgaaacggatctactc
ggcgaaaaagtccatcagaaatcacgccgagaaaaaaatcgtagcacggttaatcctgat
acggtggtacgtaacctcgccgaactaaaaatcggacaacctgtggtacatttagaaaat
ggggtagggcgttataatggattagtaaccttagacacaggggggattacggcagaatac
ctgattttacactatgcgggtgattccaaattatatgtacccgtttcttcattacattta
atcagtcgttatattggcgggacggatgacaacgcgcctttacataaactaggtagtgaa
gcgtgggcaaaatcacgtcaaaaagcggcggaaaagatccgagatgtagcagcagaatta
cttgatgtttatgcaaaacgagaaaccaaaaaaggatttgcatatcaatatgataaagag
ctttataaacagtttagtgccactttcccttttgaagaaaccgaagatcaacagctggca
atcaatgcggttatcagtgatatgtgccaaccaaaagcaatggatcgtttggtgtgtggc
gatgtgggctttggtaaaacagaagtggcaatgcgagccacattcttagccgtaatgaac
agcaagcaggtggcagtattagtgccaacaaccttgcttgctcaacaacattttgaaaat
ttcaaagatcgttttgccgattttccagttaatgttgaaatgatttctcgttttaaaacc
gcaaaagaacaaaaagtgattttagaaaaagtcgctgatgggcaagtggatattctggtt
ggcacccataaattattacaagatgatgttaaatttaaggatcttggcttacttatcatt
gatgaagagcatcgttttggggtacgacaaaaagagaaaattaaacaattacgagccaat
gtggatattctaaccttgacagccacgccaattcctcgaactttaaatatggcatttaat
ggcattcgtgatctatctattatcgctagtccacccgctcgccgtttaagtacaaaaacc
tttgtgcgacaaaatgatgaaagcgtgattaaagaggcagtgttacgtgaaattttgcgt
ggcgggcaggtttattaccttcataatgatgtcgccaccattgaaaattgtgccgataaa
ttagcagaattggtaccagaagcacgtattgttattggacacggacaaatgcgagaacgt
gatttagaacgtgtgatgagtgatttttatcatcagcgttttaatgtactggtttgctca
accattatcgaaacaggaattgatgtcccaaccgcaaataccattattattgaacgagcg
gataaatttggtttagcccaacttcatcaattacgaggacgagtagggcgttcgcaccat
caagcctatgcctatttattaacaccaccgattaaaaccttaaccaaagatgccaaaaaa
cgcctagaagccttagaaacgttagatagcttaggggcaggctttatgttagccacccaa
gatttagaaattcgaggagcaggcgaattactggggagcgagcaaagtggacaaatcagc
tcgattggtttctccctttatatggatttactcgaaaatgccgtgcaagctctaaaagat
gggcgagaaccaaccctagatgaaattacccaacaacaggttgaaattgaattacgagtt
tctgccttgttacctgatgattatgtgcctgatgtgaatatgcgattatctttttataaa
cgcattgccagtgcagaaaatagtcgagaattaaaagatctcaaaatagagttaatcgat
cgttttggattattaccaaaagcgacaaaaaatttattccaaattacccaacttcgccat
atagctaaacaactcgaattgaaaaaagtagaagctggaataaatggtgggtatttagaa
tttaaagaaactgcaacgccagatccaatgatgtttttagcattaatacaatcagataaa
caggtttatcgatttgacggaccatttaagtttaaatttaataccacattgaaagaaaca
gatgaaagattaacctttgttactcaattattaaataatattactgattaa
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