Phocoenobacter atlanticus: KGI96_08170
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Entry
KGI96_08170 CDS
T07499
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGI96_08170 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
patl03019
]
KGI96_08170 (rnr)
03016 Transfer RNA biogenesis [BR:
patl03016
]
KGI96_08170 (rnr)
Enzymes [BR:
patl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KGI96_08170 (rnr)
Messenger RNA biogenesis [BR:
patl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KGI96_08170 (rnr)
Transfer RNA biogenesis [BR:
patl03016
]
Prokaryotic type
tRNA degradation factors
KGI96_08170 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
QVE20314
LinkDB
All DBs
Position
complement(1692886..1695216)
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AA seq
776 aa
AA seq
DB search
MQDPNYQQESEKYDNPVPSREFILDTIRQYDAPMSREELLKSFNIDDEERTEGVRRRLRA
MENSGQLIFTKRKRYALPEKMDLLKGTVVGHRDGYGFLNVEGEDDDWFIPNGQMSRVLHG
DYVLAQPNGRDRRGRKEIRIVRVIEARKKQLVGRFFLESGVGFVVPDDSRITQDILIPDE
HRLGARMGQIVVVELKERTASFKRPIGVITEILGENLAPGMEIEIALRNHDIPYEWSKEV
EKQVEKLKEDVPEEAKLGRVDLRELPLVTIDGESARDFDDAVFCQKEGNGWRLWVAIADV
SYYVRPKTALDLEAIQRGNSVYFPNRVVPMLPEVLSNGLCSLNPQVDRLCLVAEMTVSEK
GKLTGYEFYEAVMNSHARLTYTKVWKMLQGDEDLRERYAPLVPHLEELNNMFKVLTKARQ
NRGAIEFDTIESQFIFNPEGRIERIEPLIRNDAHKIIEECMILANVASAKFIEKANEPSL
YRVHALPSEEKLTSFRTFLKEHGLLLDGGLKPTPKHYAKLLEKVRERPDAELIQTMLLRS
LKQAVYSADNVGHFGLALTEYAHFTSPIRRYPDLLLHRAIKYLMEKEKGNKRYYTDGGGY
HYKIDDIDQFGEKCSATERRADDATREVADWLKCEYMQDHIGEEFDGVITSVTGFGLFVK
ITELMIDGLVHISTLDNDYYRYDADRQRLVGGSGIIYRLGDQVKIKVAGVNLDDKKIDFV
LLDSKGRSLGYGKAKKPTKKKPKSKTKKAVFKETSTVKTKKKKAQKTVKNRNKKTV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacccaaattatcaacaagaatctgaaaaatacgataatcccgtacccagccga
gaatttattttagacaccattcgtcaatatgatgccccaatgagccgtgaagagttgctt
aaatcatttaatatcgatgatgaagaacgaacggaaggcgtgcgtcgtcgtttacgagca
atggaaaattcagggcaactgatttttaccaaacgtaagcgttatgcgttacctgaaaaa
atggatttactcaaaggtacggtagttggacatcgagatggctacggttttttaaacgta
gaaggtgaagatgacgattggtttattccaaacggacaaatgagccgagtgctacacggc
gattatgtattagctcaaccgaatggcagagatcgtcgtgggcgtaaagaaattcgtatt
gtgcgagtgattgaagcacgtaagaaacagcttgtaggacgctttttcctagaatcaggt
gtgggctttgtcgtacctgatgatagccgtattacccaagatattttaattcctgatgaa
catcgcttaggggcgagaatggggcaaatcgtagtggtggaattaaaagaacgcactgcg
agttttaaacgcccaatcggtgtgatcactgaaattttaggcgaaaacctagcaccggga
atggaaattgagatcgccttgcgaaaccacgatattccttatgaatggtcaaaagaagtt
gaaaaacaggtcgaaaaactcaaagaagacgtgccagaagaagcaaaattagggcgtgtt
gatctgcgagaattaccactggttactattgatggcgagagtgccagagattttgatgat
gcggtattctgtcaaaaagaaggcaacggctggcgtttgtgggtggcgattgcggacgtg
agttattatgttcgtcctaaaacagcactagatttagaggctattcagcgtggtaactcg
gtttatttcccaaatcgtgttgtaccaatgttaccagaagtgctttcaaatggactttgt
tcattaaatccacaggtagatcgtctctgtctagtggcggaaatgaccgtatcagaaaaa
ggaaaattaacgggttatgagttttatgaagcggtaatgaactcccacgcacgtttaacc
tataccaaagtatggaaaatgctacaaggtgacgaagacttacgtgaacgctacgcaccg
ctagtgccacatttagaagaattaaataatatgttcaaggtgctaacaaaagcacgtcaa
aatcgtggtgcaatagagtttgataccatagaaagtcaatttatttttaacccagaaggg
cgtattgaacgtattgaaccgttaattcgcaatgacgcacataaaattatcgaagagtgt
atgattttagccaatgttgcctcagcaaaatttatcgaaaaagctaatgaaccgtcgtta
taccgtgttcacgcgttgccaagtgaggaaaaactgacaagttttagaactttcttaaaa
gaacacggcttattattagatggtggcttaaagccaacgccaaaacattatgccaaatta
ttggaaaaagtgcgtgaacgtcctgatgctgaattaattcaaacaatgctgttacgttct
ttaaaacaagcggtttattctgcggataacgtggggcattttggattagctttaacagaa
tatgctcactttacttcgccaattcgtcgttaccctgacttattattacaccgtgcaatt
aaatatttgatggaaaaagagaaaggtaataaacgttattatactgacggtggcggttat
cattataaaattgatgatatcgatcaattcggcgaaaaatgttcagcaacggaacgtcgt
gctgatgatgcaacccgtgaagtggcggattggctgaaatgcgaatatatgcaggatcat
atcggcgaagaatttgatggtgtgattaccagcgtaactggttttgggttatttgtaaaa
attaccgaattgatgatcgatggtttagtacatatttccaccttagataatgattattac
cgttatgatgctgatcgtcagcgtctagttggcggaagtggaattatttatcgcttaggg
gatcaagtaaaaatcaaagtagcaggcgtgaatttagatgataaaaaaatagattttgtt
ctacttgattcaaaaggtcgttcattggggtatggcaaagctaaaaagccgaccaagaaa
aaaccaaaaagtaaaactaaaaaagctgttttcaaagaaacttcaacggtaaaaacgaag
aagaaaaaagcacagaaaacggtaaaaaatcgtaacaaaaagacagtataa
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