Phocoenobacter atlanticus: KGI96_10225
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Entry
KGI96_10225 CDS
T07499
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03420
Nucleotide excision repair
patl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KGI96_10225 (uvrD)
03430 Mismatch repair
KGI96_10225 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
patl03400
]
KGI96_10225 (uvrD)
Enzymes [BR:
patl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KGI96_10225 (uvrD)
DNA repair and recombination proteins [BR:
patl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KGI96_10225 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
KGI96_10225 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
DUF4391
Motif
Other DBs
NCBI-ProteinID:
QVE20678
LinkDB
All DBs
Position
2114359..2116545
Genome browser
AA seq
728 aa
AA seq
DB search
MDFSLLLDGLNEKQREAVAAPVGNYLVLAGAGSGKTRVLTHRIAWLIGVENIPESNILAV
TFTNKAATEMRHRIEHTLSSSNHRLFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSE
DQHRLIKRLLKLHHIDEKNFPPKQVMWYINGKKDKGLRPHQIDHQNDSNEKRLIKIYQIY
QDACNRAGLLDFAELLIRAYELFKDKPLILKRYQERFPHILIDEFQDTNHIQYCWIRLLA
GQSGNVIVVGDDDQSIYGWRGAEVENIQRFLEDYPNSQTIRLEQNYRSTGHILHSANALI
SNNKNRLGKDLWTDSGNGDPVEIYEAFNELDEARYVASQIKQWCKNDGELNECAILYRSN
SQSRVMEEALIQTDIPYRIYGGMRFFERQEIKDALAYLRLISNRQDDAAFERVVNTPTRG
IGDRTLDILRQLTRTRQITLWQAVQVAVQEEQLSGRAANALLRFTELINTIDIETSEMPL
FEQTEFVINRSGLLDMYQKEKGEKGEARIENLGELVTATRQFTKPDEAEDMTDLTAFLTH
ASLEAGESQASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGIFPSGRSFEEDRLQEERRL
AYVGITRAKKKLTLSYAENRRLYGKEERHIPSRFISELPEQHIQVVRLRGTINRPANFVK
SSQHRTASSSSISQDTGWQMGQKVQHSKFGQGTIINVEGSGEQTRLQIAFVQNGIKWLVA
KMAKLEKV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcattattattagatggactgaatgaaaagcaacgtgaagcagtcgctgcc
cctgtgggtaactatttagtacttgcaggagctggcagtggtaaaacacgagttttaacc
catcgtattgcgtggctgattggcgttgaaaatattcctgaatccaatattcttgctgtt
acttttaccaacaaagcagcgacagaaatgcgtcatcgtattgagcatacgctttcatcc
tctaatcatcgtctatttggaatgtgggttggtacatttcatagtattgcaaaccgttta
ctacgctctcattatttggatgccaatcttccgcaagattttcagattatggattcagaa
gatcaacatcgcttaattaaacgtttactcaaattacatcatattgatgagaaaaacttc
cccccaaaacaagtgatgtggtacatcaatggtaaaaaagataaagggttacgcccgcat
caaatcgatcatcaaaatgatagcaatgaaaaaagactgataaaaatttatcaaatttat
caagatgcctgtaatcgtgcgggtttgttagattttgctgaattattaattcgagcttat
gaattatttaaagataagcctctgattttaaaacgttatcaagaacgctttccacatatc
ttgattgacgaatttcaagataccaaccacattcaatattgttggattaggctattagca
ggacaatctggcaatgtcattgtggttggcgatgatgatcaatctatctatggttggcga
ggagcagaagttgaaaatattcaacgctttttagaggattatcctaattcacaaacaatt
cgtcttgagcagaattaccgttctacggggcatatattacatagtgcgaatgcccttatt
tcaaataataaaaaccgactaggaaaagatttatggacagatagcggcaacggtgatcct
gttgaaatttatgaagcctttaatgagttagatgaagcccgttatgttgcttcacaaata
aaacaatggtgtaaaaatgacggcgaattaaatgaatgtgccattctttatcgtagcaat
agccaatctcgtgtgatggaagaagccttaattcaaacggatattccttatcgtatttat
ggtggaatgcgattttttgaacgccaagaaattaaagatgcactggcatacttacgttta
atatccaatcgacaagatgatgctgcttttgaacgtgtcgtgaacacgccaacaagaggg
attggggatcgtaccctagatattttgcgacaactgactcgtactcgtcaaattacactg
tggcaagctgtacaggtcgccgtacaagaagagcaactttcaggacgtgctgctaatgct
ttattacgctttactgaattgatcaataccatcgatattgaaacctcagaaatgcccctt
tttgagcaaaccgaatttgtcatcaaccgctcaggtttattagatatgtatcaaaaagag
aaaggtgaaaaaggtgaggctcgtattgaaaacttaggggaattagtcactgcaacacgt
caatttactaaacctgatgaagcggaagatatgacagatttaaccgcatttcttactcac
gcctcattggaagcgggagagtctcaagcttcacctcatcaagattatgttgaattaatg
acattacattcagccaaaggcttggaattcccacgtgtatttatcgtaggtgtagaagaa
ggtatttttccaagtggacgaagttttgaagaagatcgtttgcaggaggaacgccgtttg
gcttatgttggcattactcgagccaagaaaaaactcaccttaagttatgctgaaaatcgc
cgtttatatggtaaagaagaacgtcatattccatcacgttttatttcagaactaccagaa
caacatattcaagtggtgcgtttacgtggcacaatcaaccgccctgcaaattttgtaaaa
agttcacaacatcgtaccgcttcctcctcttcaatatcacaagatacaggttggcaaatg
ggtcaaaaagttcaacatagtaaatttgggcaggggactattattaatgtagaaggatct
ggtgaacagacacgtttacaaattgcctttgttcaaaatggcattaagtggttagtggct
aaaatggcgaagctagaaaaagtgtaa
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