Pectobacterium atrosepticum 21A: GZ59_10860
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Entry
GZ59_10860 CDS
T03293
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pato
Pectobacterium atrosepticum 21A
Pathway
pato03030
DNA replication
pato03430
Mismatch repair
pato03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GZ59_10860 (dnaE)
03430 Mismatch repair
GZ59_10860 (dnaE)
03440 Homologous recombination
GZ59_10860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pato03032
]
GZ59_10860 (dnaE)
03400 DNA repair and recombination proteins [BR:
pato03400
]
GZ59_10860 (dnaE)
Enzymes [BR:
pato01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GZ59_10860 (dnaE)
DNA replication proteins [BR:
pato03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GZ59_10860 (dnaE)
DNA repair and recombination proteins [BR:
pato03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GZ59_10860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AIK12942
LinkDB
All DBs
Position
1167019..1170501
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKTAALGMPALAITDFTNLCGLVKFYGGAHGA
GVKPIIGADFYVESDELGDELAHLTVLAMDNEGYQNLTLLISHAYQRGYGAAGPTIDRDW
LIEHQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELTRTSRPDEES
YIHAAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYM
RSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGEMSTADFLVQCSKKGL
EDRLESLFPDPEVRVARRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDMVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKLGQEPIDIATIPLGDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPITQYIKEIERYAAGVRLKDMHPTDRGKMTTAVGLVLAARVMITKRGNRIGICTLD
DRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARARLRFGAAWRVTPAD
ALLNELRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggccaaagtcggtccgctggtaaaaaaaacggcggcactcggtatgccagcgctggcg
attaccgattttaccaacctgtgtgggctggttaaattctatggcggcgcgcatggcgca
ggggtcaaacctatcatcggtgcagacttctatgtcgaaagcgatgaattaggggatgag
ctcgcgcatcttactgtgttggccatggataatgaaggctaccagaatctcacgctgctg
atttcccatgcttatcaacggggttatggcgctgctgggccgacgattgaccgtgattgg
ctcattgaacatcaggaaggactgattctcctttctggcggtcgccggggtgatgttggc
cgatttttgctgcgtggtaatcaggcgcaggccgaacagtgtctggcattctatcaggag
cactttcctcagcgttactacctggaattgacccgcacgtcccgccccgatgaagaaagc
tatatacacgcggccgtggagttggcaaccaagtacgggttgcccgttgtggcaaccaat
gaagtgtgcttcatcagcactgatgattttgacgctcacgaaatccgcgttgccattcac
gatggctacacgcttgacgatcccaaacgcccacgtcattacagcccgcagcagtacatg
cgctcggaagaggaaatgtgcgagctgtttgccgatatcccagaagcgctggcgaacagc
gtcgaaattgccaagcgctgtaacgtaacgatccggttgggcgaatattttctgccgcag
ttcccgacgggtgagatgagcaccgcagattttctggttcagtgctcgaaaaaaggactg
gaggatcgtcttgaatccctgttcccagatccagaagtgcgcgtcgcgcgtcggccagaa
tatgatgagcgtctggacattgaactgggcgtcatcaaccagatggggttccccggctac
ttcctgatcgtcatggagtttattcagtggtcgaaggataacgatgtgcctgttggccct
gggcgtggttccggtgcgggctcattggtagcctactcgctgaaaatcaccgatctggat
ccgctggagttcgacctgttgttcgaacgcttcctcaaccctgaacgcgtctcaatgcct
gacttcgatgtcgatttctgtatggaaaaacgcgacatggttatcgaccacgttgcggag
atgtacgggcgtgacgcggtatcacagattatcaccttcggtacgatggcggcaaaagcg
gttattcgtgacgtagggcgtgtgctcgggcacccttatgggtttgtcgatcgtatttca
aaactggtgccgcccgatccgggcatgacgctggaaaaggcgtttgcggccgaaccgcag
ttgccagaaatttatgaagccgatgaggaagttaaggccctcatcgatatggcgcgcaag
ctcgaaggcgttacgcgtaacgccgggaaacatgcgggtggggtggtgatatcccccacc
aagattaccgatttcgcgccactgtattgcgattcggaagggaaccacccggttacccag
tttgataagaacgacgtggaatacgccgggctggtgaagttcgacttccttggcctgcgt
acgttgacgattatcgactgggctctggagatgatcaacgcccgtcgcgcgaagctagga
caggaaccgattgatatcgcgacgattccgctcggcgataagaaaagtttcgacatgctg
caacgttcggaaaccaccgcggtattccagcttgaatcgcgtggcatgaaagatctaatc
aagcgcctgaagcccgactgctttgaagatatgatcgctctggtggcgttgttccgccct
ggtccgctgcaatccggcatggtggataacttcatcgaccgtaagcatggtcgtgaagca
atttcgtatcctgatattgaatggcagcacgaatcactcaagccagtgctggagccgacc
tacggtattatcctgtatcaggaacaggtcatgcagatcgctcaggttctggcgggttat
acgctgggtggtgcggacatgctgcgccgtgctatggggaaaaagaaccccgttgaaatg
gcgaagcagcgtggtggctttgaagatggtgccaaatctcgcggcgtgaacggcgaactg
gcggttaagattttcgacctggtggaaaaattcgctggttacggctttaataaatctcac
tccgctgcctatgcactggtgtcttaccaaacgctgtggttgaaagcgcactatccggct
gaattcatggcggcggtgatgacggccgatatggacaacacggataaagtggtggggctg
gttgatgaatgctggaggatggggttaaaaatcctgcctccagacatcaatagcggcctg
tatcactttcacgttaacgatgatggagagattgtttacggcatcggtgcgattaaaggt
gtcggtgaaggcccgattgaggcgattatcgaggcgcgtaatcagggcggctattttaga
gaattgtttgacctctgcgcacgtactgacatcaaaaagctgaaccgacgcgtgctggaa
aagctgattatgtctggggcgtttgaccgcctggggccgcatcgcgccgcgctgatgaac
tcattggctgatgcgctgaaggccgccgatcagcatgctaaagcggaagccattggtcag
gtggatatgtttggcgtgttggccgatgcgcctgagcaggttgagcaatcctacagcacc
gtgccaccgtggccggagcaggtcgtgttggatggtgaacgggagacgctggggctgtac
ctgaccggccacccgatcacgcaatatattaaggaaattgaacgctatgccgctggcgta
cgtttgaaagatatgcacccgacggatcggggtaaaatgaccactgccgttgggctggtg
ttggcggctcgcgtcatgatcaccaaacggggcaaccgtattggtatctgtacattggac
gatcgttccggtcggcttgagatcatgctgtttaccgatgcattggaaaaatatcagcat
ttacttgagaaagaccgtatccttatcgccagtggacaggtcagctttgatgacttcagc
ggcgggcttaaaatgaccgtccgagagttaatggatatcagtgaagcgcgggaaaaatac
gcgcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagctattaaaccgt
ctccgtcaatcgttggaaccccatcgatcggggacgatcccagtgcatctctattaccag
cgtgaagatgcgcgtgcccgactacgtttcggcgcagcatggcgtgtaacgcctgccgat
gcgctattgaacgagctgcgtacattagtgggtaatgagcaggtggaactggaatttgac
taa
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