Pectobacterium atrosepticum 21A: GZ59_11350
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Entry
GZ59_11350 CDS
T03293
Symbol
sbcC
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pato
Pectobacterium atrosepticum 21A
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pato03400
]
GZ59_11350 (sbcC)
DNA repair and recombination proteins [BR:
pato03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GZ59_11350 (sbcC)
Archaeal homologous recombinant proteins
GZ59_11350 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
cobW
Death_MADD
AAA_21
nSTAND3
SMC_N
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIK12988
LinkDB
All DBs
Position
complement(1236920..1240603)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNALKGEWKIDFTQEPFSSNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGQLSAGNNDLMTRNTAECLAEVEFEVKGVGYRAFWNQRRARNAPDGNLQAPKAELALIE
GGKILSEKLNDKKEMTTQLTGLDFGRFTRSMMLSQGQFAAFLNAKADDRAELLEELTGTD
IYGLISERVYEKHKQANVALNTLQARASGIQLLTDEQRQQVETQLAELIQQEQQGNAERE
QALTTLRWFEQLTQRQTQLTNTQAQHASAESAIQQAKPQLDKLANSEPAEKLRPLHQERE
RYRQESLTLVQQIEQLTEKQSAEQLSLTTLRQQEEKAEQDVTKHKLERQKQELLINEQVV
PLDHRIATLEQQKNQQQDDLTKTQRRLQADESKQTQIAAEQQQAKQQIEQVQSYRQQYAH
HQQWGEQLPLWRTQFRQLRQFQDEQHKLNQKQAQHTEQSATLQQEAETLTAQQREQQAVV
DAARELFTHHDEALKNQEAQQPLSALHQRFNQLIDQRTARQHLTAISDQFQRLYARKQQY
LIRQEEIQGHISQSEALKKQQQSEYEQRTQHLIDLETVYRQEERIVKLEAERQRLQTGKA
CPLCGSTEHPAIERYQALQPSETQRRLTALQQEVSQLATALANTTARLASLEQQREQLQQ
DIAQNDGEHQTLLQQWQDVSERLQVNYTLEQQDAVAAWFAQREAEEQDIRQQIGTREQQQ
KRWQESKDSLTANETLLRELDQKIALNTQKQTSLRVTQEETTQSLQNVHQQLAQHTEEIT
QALANAGLLLPEDHAQDGWLVQRESEWQDWKTKEQELSRLTPRLATLESDLQHLNHSVTE
AKQLLQMQQQQLEQHNGALKTSQQARLELFGDRKTADVREHLQRSSQLYDDAIRLALSAR
QHAETTLSRLTGELTRTQQQYEQSTHQRDSTTERFHQALQLSAFADETAFLNALLDEQER
QTLQTLKEKLYQSLQQAAAFHQQAEQALLEQQQKRPASLPEEATQEAIQQQQSELNEVLK
TNLRQQGEFQRQLSDDRQQRQNQQVLLNEIAQSQQMYDDWDALNLLIGSSKGDKFRKFAQ
GLTLDHLIYLANLQLSRLHDRYQLKRKPGGELELLVMDTWQADAERDTKTLSGGESFLVS
LSLALALSDLVSHKASIDSLFLDEGFGTLDAETLDIALDALDNLNASGKTIGVISHVEAM
KERIPVQIKVQKINGLGVSQLAPQYAV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagtctgcgcttaaagaatctcaacgcactgaaaggcgaatggaagatc
gacttcacgcaggagccattttccagcaacggcttgtttgcgattaccggcccaacaggc
gcaggaaaaaccacactactcgacgccatctgtctggcgctttatcacgaaacaccacgg
ttgggtcagctttccgctggtaataatgacctgatgacccgtaacaccgcagagtgcctc
gccgaggtcgagtttgaggttaaaggcgtcggatatcgcgctttctggaaccagcgtcgg
gctagaaacgccccagacggtaacttacaggcccccaaggccgaacttgcgctcattgaa
ggcggcaaaatcctgagcgaaaagctcaatgacaagaaagagatgaccacgcagctcacc
gggctggatttcggccgcttcacgcgatccatgatgctgtcgcaggggcagtttgctgcg
tttctcaacgcaaaagccgacgacagagcggaactgctggaagagctgactggtacggat
atttacggactgatttccgaacgcgtctatgaaaaacacaaacaggcaaacgtagcattg
aacacgctacaggcgcgcgcatctggtattcagctgttgaccgatgagcagcgtcagcag
gtagaaacacagcttgccgagctgatccagcaagagcaacagggcaacgccgagcgtgag
caagcactgactacgctgcgctggtttgagcaattgacacagcggcaaacgcagctcacc
aacacgcaggcacaacacgcgagcgccgaatcagccattcagcaggccaagccgcagctc
gacaagttagccaacagcgaaccggcagaaaaactgagaccgctacatcaggagcgagag
cgctatcggcaggagtctcttacgctcgtccaacagattgaacaactgactgagaaacaa
agcgcagaacagttgtctttgacaacgttacgccagcaggaagaaaaggcagaacaggac
gttactaagcataaactggaacgtcagaaacaagagctgttgatcaacgaacaggttgtg
ccgcttgaccatcgtattgccacgttggagcagcaaaaaaaccagcagcaggacgatctg
acaaaaacgcagcgtcgcctacaagctgacgaaagcaaacaaacgcagatagcggcggaa
caacagcaagccaaacaacagattgaacaggttcaatcttatcgccagcaatacgcacat
catcagcaatggggagaacagcttcctctgtggcgcacacagtttcggcaattgcgccag
tttcaggacgagcagcataagctgaaccaaaaacaggcacagcacaccgaacagtcggcg
acgctacagcaagaggcagagacgctgacggcacagcagcgtgaacagcaagcggtcgtt
gatgcagcacgcgagttgttcacacatcacgatgaggcactgaaaaatcaagaagcacag
cagccactttccgccttgcaccagcggtttaatcaactcatcgatcagcgaaccgcacgc
caacatctcacggcaatcagcgaccagttccagcgtctttacgcccgtaaacagcagtac
ctcatcagacaagaggagatacaagggcatatcagccagtcagaagccttaaagaaacag
caacagtctgagtacgagcagcgcacccagcatctgatcgatctggaaacggtgtaccgg
caggaagaacggatcgttaagctggaagctgaacggcaacggctacagactggaaaagcg
tgcccactatgtggttcaaccgagcatccagcgattgaacgctatcaggcgctacaacca
tccgaaactcaacgtcgcctgacggcgctacaacaggaagtaagccaattagcaacggca
ctggcgaatacgacggcacggctggcctcactagagcagcagcgggaacagctgcaacag
gacatcgctcagaacgatggcgaacatcaaacgctgttgcaacagtggcaagatgtcagt
gagcgcttacaagttaactatacgctggaacagcaggacgcggttgccgcttggtttgca
caacgcgaggccgaagaacaggatattcgccagcagattggcacacgcgaacagcagcaa
aagcggtggcaggaaagtaaggattcactgacagctaatgagacattgctgcgggaactc
gaccagaaaatcgcgctgaatacccagaaacagacctcgctgcgcgttacgcaggaagaa
actacccaatcgttgcaaaacgtgcaccaacagctcgcacagcacactgaggaaatcaca
caggcgctggcaaatgcgggccttcttctgccggaagatcacgcacaggatggttggttg
gttcagcgcgagagcgaatggcaagactggaaaaccaaagagcaagagctgtctcgctta
acgcctcgattagccacgctggaaagcgatctccagcatctgaatcacagtgtgaccgag
gcaaagcagctactacagatgcagcaacagcagttagaacagcacaacggcgcactcaaa
acgagccaacaagcgcggcttgagcttttcggcgacaggaaaacagcggacgttcgtgaa
cacctgcaacggagcagccagctgtatgacgacgcgatcaggctagccctgtcagcacgt
cagcacgctgaaacgacgttgagccgcctgacgggagagctgacccgcacgcagcagcag
tatgaacaaagcactcatcaacgcgatagtactaccgaacgctttcatcaggctttgcag
ctaagtgcttttgctgatgaaaccgccttcctgaatgcgctgcttgatgaacaggaacga
cagaccttgcagacattgaaggagaaactgtatcagagcttgcagcaggcagcggcgttt
caccagcaggctgaacaggcattacttgaacagcaacaaaaacggcctgcatccctacca
gaagaagcaacgcaggaagcaatacaacagcagcagtcagaactgaatgaggtgctgaaa
accaacctgcggcaacagggtgaattccaacgtcagttatctgacgatcggcaacagcgc
cagaaccaacaggtcttgcttaacgagattgcccaaagccagcaaatgtatgatgactgg
gatgcgttaaacttgctgatcggttcaagtaagggggataaattccgcaagtttgctcag
gggctaacgttggatcatctgatctacctcgccaatctccagctttcacgcctgcacgat
cgttaccagctaaaacgtaaaccgggtggcgagctggaacttctcgtgatggatacctgg
caggcagatgccgagcgcgatacaaaaacgctatccggcggcgagagctttttggtgagt
ctgtcgctggcgctggcgctatccgatctggtcagccataaagccagcatcgactctctg
tttctagatgaaggcttcggcacgctggatgccgaaacgctggatatcgcactggatgca
ctcgataacctgaacgcctccggtaaaaccatcggcgtcattagccatgtcgaagccatg
aaggagcgcattcccgtacagatcaaagtgcagaaaattaacggactaggcgtcagccaa
ctggcaccgcagtacgccgtttag
DBGET
integrated database retrieval system
