Pectobacterium atrosepticum 21A: GZ59_17530
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Entry
GZ59_17530 CDS
T03293
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pato
Pectobacterium atrosepticum 21A
Pathway
pato03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZ59_17530 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pato03019
]
GZ59_17530 (rhlE)
Enzymes [BR:
pato01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GZ59_17530 (rhlE)
Messenger RNA biogenesis [BR:
pato03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GZ59_17530 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AIK13573
LinkDB
All DBs
Position
1942787..1944238
Genome browser
AA seq
483 aa
AA seq
DB search
MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLTSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQ
MMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP
AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNSPSELVTQHVHFVDKRRKRELLSQ
LIGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGGIRV
LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLR
DIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGSRGGSSGGARSASPRAPSGAPRGQS
ERSERSQGQGERRSADANRQPRKPGGNSDSPWGTGGKGNSGKGSGEGQRRAPRPQNRSKP
ADK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctgagtgccgatattctgcgcgcgattgaagagcagggt
tatcgcgatcctacccctgttcagcgtcaggcaattcctgtcgtgttggaagggcgcgat
ttaatggccagtgcccaaacgggtacgggtaaaacggcgggctttacgctgccgttattg
caactgctgacgagtcgcgaagcgcagaataaagggaaagggcgccgtccagtacgggcg
ctgatcctgacgccgacccgtgaactggcggcacagattgatgagaacgtgaaggcgtat
agcaaatatttacccctgcgttcactggtcgtattcggcggcgtgagcatcaacccgcag
atgatgaagctgcgtggcggcgtggatattctggtggcgacgccgggacgtctgctcgat
ctggaacatcagcgtgccgttgacctgtctcagatcgaaattctggtgctggatgaagca
gaccggatgctggatatgggcttcattcacgatattcgccgtgtactggcgaagctacct
gctaaacgccaaaacctgctgttctccgccactttctctgatgagatcaaagcgctggcg
aacaaactgctgaccaatccggcttcggtcgaagtcgtgcgtcgtaattcgccgtctgaa
ctggtcacgcagcatgtacattttgttgataagcgccgcaaacgtgaactgctgtcgcag
ctaattggtgaaaacaactggcagcaggtactggtctttacccgtaccaagcacggggct
aaccacttggccgagctgttggaaaaagatggtatcaccgctgcggctatccacggtaat
aaaagtcagggtgcgcgtactcgcgcgctggccaacttcaaggacggcggcatccgtgtg
ctggtcgcgacagatatcgccgcgcgcggtctggatatcgaccagttgccgcacgttgtg
aactatgaactgccaaacgtgccagaagattacgttcaccgtatcggccgtaccggtcgt
gcagaagcgacgggcgaagcgctgtcgctggtgtgtgtggatgaacacaagctgctgcgt
gacatcgaacgtctgctgaagcgtgaaattccgcgtatcgctattgaaggctacgagccg
gatccgtccatcaaggcagaaccgattgtgaatggccgtcagggcagccgtggtggtagt
agtggtggtgcgcgtagtgcgtctcctcgtgcaccgtctggcgcaccacgcggtcagtcc
gagcgcagcgaacgtagtcaaggtcagggcgagcgccgttcagccgatgctaatcgtcag
ccgcgtaaaccgggcggtaatagcgatagcccatggggtactggcggaaaagggaatagc
ggtaagggcagtggcgaaggacaacgccgcgcaccgcgaccgcaaaaccgcagcaagcca
gcggacaagtaa
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