Pectobacterium atrosepticum 21A: GZ59_31000
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Entry
GZ59_31000 CDS
T03293
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pato
Pectobacterium atrosepticum 21A
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pato03009
]
GZ59_31000
Enzymes [BR:
pato01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GZ59_31000
Ribosome biogenesis [BR:
pato03009
]
Prokaryotic type
rRNA helicases
GZ59_31000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIK14879
LinkDB
All DBs
Position
complement(3375126..3376508)
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AA seq
460 aa
AA seq
DB search
MSTTSFSSLALPAEQLSNLNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGI
GLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL
VHAPHIVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQ
TLLFSATYPQEIEQISARVQRQPQRFEIADDVEESAIEQRFYETTKDQRLPLLIAILSHY
QPASCVVFCNTKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLVATD
VAARGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLIEDY
IGMRIKWTSADEISRSGDVALEPEMMTLCIDGGRKAKIRPGDILGALTGDVGLTAAEVGK
IDMFPLHAYVAIRKDSAKRALQQLQKGKIKGKSCKARLLK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaacctctttttcttccctcgcgctgccggcagagcagttatccaatcttaat
gaactgggctataccgaaatgacgccagtccaggcggcgacgctgccagccgttctgagc
ggcgcagacgtgcgggccaaggcgaaaaccggtagtggcaaaacggcggcatttgggatt
gggttgctagatcgtattgtcgtcagcgattttaccacgcaggcgctggtgctatgtccg
acgcgtgaactggccgatcaggtcagcaaagaactgcgccgtctggcgcgttttgcgcaa
aacattaagattttgacactgtgcggcggtcagccgatggggcagcagctcgattcactg
gtccacgcaccgcacattgttgtcggtacgccggggcgtattcaggatcatttacgcaag
cagtctctggctttagatagcctgaaagtgttggtgctggatgaagcggatcgcatgctg
gacatgggctttactgacgccattgatgatgtgatttcctatacgccgtccgatcgtcaa
acactgctgttttccgctacgtacccgcaagagatcgaacagatcagcgcacgggttcag
cgtcagccgcaacgtttcgaaatagcagatgacgtggaagagtcggccattgaacaacgt
ttctatgagacaacgaaagatcagcgcctgccgctgttgattgccattctgagccattat
cagccagcatcctgcgtggtgttttgcaacacgaaacgtgattgccagagcgtatttgag
gcactggagatgcgcgggattagcgtatcggcattgcatggcgatttggaacagcgcgac
cgcgatcaggttctggtgcgtttctctaaccgtagctgtcgcgtgttggtagcaacggat
gttgcggctcgcggtcttgatatcaaagagttggcgctggtggtgaattttgagctggct
ttcgatcctgaagttcacgttcatcgcattggcagaacaggccgcgcggggacgcagggt
ctggctgtgagcctgtgtacgccacaggaaatgaaccgcgctaacctgattgaagactat
atcggtatgcgaattaaatggacatcggcggatgagattagccgcagtggtgatgttgcg
ctcgaacctgagatgatgacgctgtgcattgatggtggcagaaaggccaaaatccgtccc
ggcgatattcttggcgcgttaactggcgatgtaggattaacggcagcggaagtcgggaaa
attgatatgttccctctacatgcttatgtcgcaatccgtaaagacagtgctaaacgtgcg
ctgcaacagctccagaaaggcaaaatcaaaggaaaaagctgtaaggccagattgttaaag
taa
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