Pectobacterium atrosepticum 21A: GZ59_33390
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Entry
GZ59_33390 CDS
T03293
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pato
Pectobacterium atrosepticum 21A
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pato03016
]
GZ59_33390 (ligT)
Enzymes [BR:
pato01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
GZ59_33390 (ligT)
Transfer RNA biogenesis [BR:
pato03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
GZ59_33390 (ligT)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AIK15104
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All DBs
Position
3650562..3651092
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AA seq
176 aa
AA seq
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MSATRRLFFALSLPETTQQEIIRWRAEHFPLEAGRPVAAANLHLTLAFLGDVSEQKAQVL
QTLASRIRQPAFTLTLNDAGHWPRPGVVWLGCRRAPRGLLQLAELLRSQAARNGCYQTAL
PFHPHITLLRGATRPVAIPPATFSWQADMTHFSLYQSLFDNGKTRYQKLESWSFIK
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccacccgccgcctgttttttgccttatcactgccggaaaccacacagcaagag
attatccgctggcgtgccgaacatttcccactggaagcaggccgtccagtggctgcggcc
aaccttcatctgacgctggcttttttaggcgatgtgagtgagcaaaaggcgcaagtctta
cagaccttagcaagccgcattcgtcagcccgcgtttaccctcacgctgaatgacgcagga
cactggccgcggcccggtgttgtctggctgggctgccgccgtgcaccgcgtggattgcta
cagctcgcggaactattgcgctctcaggcggcgcgcaacggctgctatcaaacagcatta
ccttttcacccacatattacgttattgcgcggcgcgactcgtcccgtggcgattcccccc
gctacgttcagttggcaggccgacatgacacacttttccctttatcagtcacttttcgac
aacggtaaaacccgctatcaaaagctggaaagttggtcatttattaaatag
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