Pectobacterium atrosepticum 21A: GZ59_42750
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Entry
GZ59_42750 CDS
T03293
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
pato
Pectobacterium atrosepticum 21A
Pathway
pato03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZ59_42750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pato03021
]
GZ59_42750
03019 Messenger RNA biogenesis [BR:
pato03019
]
GZ59_42750
Transcription machinery [BR:
pato03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GZ59_42750
Messenger RNA biogenesis [BR:
pato03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GZ59_42750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIK15970
LinkDB
All DBs
Position
complement(4612886..4614145)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaattactcttggcgaaaat
atggggcttgaaaatcaggcccgcatgcgtaaacaggatattatcttcgctatcctgaag
cagcatgccaaaagcggcgaggatattttcggcgacggtgtgctggagatattgcaggat
ggcttcggctttcttcgctccggagacagctcctacctcgcaggccccgatgatatctac
gtttctcctagccaaatccgccgctttaacctccgcactggtgacaccatttctggcaag
attcgtccgccaaaagaaggtgaacgttactttgcgctgttgaaagttaacgaagtcaac
tacgacaaacctgaaaacgcccgcaataagatcctgttcgaaaacttaacaccgctgcat
gcaaactctcgtctgcgtatggaacgtggtaacggttcgacagaggatctgacggcgcgc
gtgctggatctggcttcgcctattggccgtggtcaacgtggcctgattgttgcgccgccg
aaagcgggtaaaaccatgctgctgcaaaacatcgcgcagagcattgcttacaaccatcct
gactgtgtgctgatggtgctgctgattgacgaacgtccggaagaagttaccgagatgcag
cgtctggtgaaaggcgaagtcattgcgtcaacgtttgacgagccagcttcccgtcacgtt
caggttgctgaaatggtgatcgagaaagcgaagcgtctggttgagcataaaaaagacgtt
atcatcctgctggactccattacccgtttggcgcgtgcatataacaccgttgttccggcc
tccggcaaagtgttgaccggtggtgtggatgctaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcacgtaacgttgaggaaggcggtagcctgacaatcatcgccaccgcgctg
gttgataccggttccaagatggatgaagtgatttacgaagagtttaaaggtacaggtaac
atggaactgcacctggctcgtaaaatcgcagaaaaacgcgtattcccagcgattgattac
aatcgttctggtacgcgtaaagaagagttacttaccacctctgaagaattgcagaagatg
tggattctacgtaagatcatccacccaatgggcgagattgatgcgatggaattcctcatc
aataagttggcgatgacgaaaaccaacgatgaattcttcgatatgatgaaacgttcataa
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