Pectobacterium atrosepticum JG10-08: EV46_00785
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Entry
EV46_00785 CDS
T03199
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EV46_00785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
patr03400
]
EV46_00785
Enzymes [BR:
patr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EV46_00785
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EV46_00785
DNA repair and recombination proteins [BR:
patr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EV46_00785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
NFACT_N
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
AIA69171
LinkDB
All DBs
Position
174262..175071
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPYLVGHTILYAEVRNARLRWPVSAEILSLSDEPVLSVRRRAKYLL
IELTHGWIIVHLGMSGSLRILPEYSEPEKHDHVDLVMDSGKVLRYTDPRRFGAWLWTDSL
ETSSVLAHLGPEPLEAEFFADYLYQASRGKKTAIKQWIMDNKVVVGVGNIYASESLFAAG
IHPDRAAGSLNENDADVLVRVIKQVLQLSIEQGGTTLRDFLQSDGKPGYFAQELRVYGRN
GEPCRTCGTPIETAKHGQRSTFFCRRCQV
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccagtcgtcggggtatttcgccgtatcttgttggc
cataccatcctttatgcggaagtgaggaacgcgcgtctgcgctggccggtatcggctgag
attctttcactgagcgatgagccagtgctaagcgtgcgtcggcgggcaaagtatctgtta
attgaactcacgcatggctggattatcgtgcatctcggcatgtctggcagcttgcggata
ctgccggaatatagcgagccggaaaagcacgatcatgttgatttagtgatggacagcggc
aaggtgctgcgttacaccgaccctcggcgttttggtgcctggctgtggacggatagtctt
gaaaccagctcggtgttggcgcatttggggccggaaccgttagaggcggaattcttcgca
gattatctctatcaggcttcacgcggtaaaaaaacagcaatcaagcagtggattatggat
aacaaagtggtagttggcgtaggtaatatttacgcgagcgaatcgctgtttgctgcgggt
atccatcctgacagagctgccggatcgttaaatgaaaacgatgcagacgtattggttcgc
gtgattaaacaggtgttacaactttcgattgagcagggtggcacgacgctgcgtgacttt
ttgcaatcagatggtaaacccggttatttcgcacaggagctgcgggtctatggccgtaac
ggtgaaccttgtcggacatgtggcacgccgatagaaactgcgaaacacgggcagcgcagc
acgtttttttgccgccgttgtcaggtgtaa
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