Pectobacterium atrosepticum JG10-08: EV46_01575
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Entry
EV46_01575 CDS
T03199
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr02020
Two-component system
patr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EV46_01575
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EV46_01575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
patr03021
]
EV46_01575
Transcription machinery [BR:
patr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EV46_01575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AIA69308
LinkDB
All DBs
Position
complement(342609..344042)
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDQHDEIESFE
KADSDSLDTGEALEQRDMPEELPLDATWDEIYSAGTPSGTGSDYRDEELPIYQGETTQTL
QDYLMWQVELTPFSDTDAAIATSIVDAVDNTGYLTVPLGDILDSIGDDDVTLEEVEAVLK
RVQRFDPVGVAARDLRDCLLVQLSQFDDSTPRLAEARLIVSDHLDLLANHDFRSLIRVTR
LKEEVLKEALALIQSLDPRPGQSINTGESEYVIPDVLVRKVQGIWAVELNTDSVPRLQIN
QQYAALGNSVRNDSDGQFIRSNLQEARWLIKSLESRNDTLLKVTRCIVEQQKDFFDQGEE
FMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLIAAENPVKPLSDSKLTALLSDQGIIVARRTVAKYRESLSIPPSNQRKQLI
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggcttagccagcaactggccatgaccccacagctccaa
caggccatccgcctgttgcaactgtccacgcttgaattgcaacaggagattcaactggcg
ctagaaagcaatccgttgctcgaacaaacggatcagcacgacgaaatcgagtcatttgaa
aaggcagatagcgattcactggataccggtgaagcccttgagcaaagggacatgccggaa
gaattgccgctcgatgccacctgggatgagatctactccgcaggcacgccgtcgggcact
ggctctgactatcgcgatgaagaactccctatttatcaaggcgaaaccacgcaaacgctt
caggattacctgatgtggcaggttgagctgacgccattttcagacaccgacgcggccatt
gcgacttctatcgtcgatgcggtagacaatacaggctacctgaccgtgccgctgggggac
atcctcgacagcatcggtgacgacgacgtgacgctggaagaagtcgaagccgtacttaaa
cgcgtgcaacgcttcgatcccgttggcgtcgccgcccgcgatctgcgtgattgtctgctg
gtacagctttcccaatttgacgacagcacaccgcgtctggccgaagctcgcctgatcgtc
agcgatcatctcgatctattagccaaccatgatttccgcagcctgatccgcgttacccgt
ctgaaagaagaggtgctgaaagaagcgctagcgctgatccaatcgctcgatccacgtcct
gggcagtcgatcaacaccggtgaatccgaatacgtgattcctgacgtgctggtgcgcaaa
gttcagggaatctgggccgttgaactgaataccgatagcgttccccgattgcagattaac
cagcaatatgctgctctgggcaacagcgtacgtaacgacagcgacgggcaatttatccgc
agcaacctgcaagaagcgcgctggctcatcaagagcctagaaagccgcaatgacacgttg
ctgaaagtgacccgctgtatcgtcgagcaacagaaggatttcttcgatcagggtgaagaa
ttcatgaagcccatggtactggcagacatcgcgcaggcggtggatatgcatgaatccact
atttcacgcgtgacgacacagaagttcctgcacagtccgcgcggcatttttgagctaaaa
tatttcttctccagccacgtaaataccgatagcggtggagaagcctcgtcaacggcaatt
cgcgcgttggtgaagaagcttattgcagcggaaaaccccgtgaagccactaagcgatagc
aagcttacggcactgctctccgatcagggcatcatcgtggcgcgccgtaccgttgcaaaa
taccgagagtctttatctatcccaccatcaaatcagcgtaaacaactgatttga
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integrated database retrieval system
