Pectobacterium atrosepticum JG10-08: EV46_03100
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Entry
EV46_03100 CDS
T03199
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EV46_03100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
patr03019
]
EV46_03100
03009 Ribosome biogenesis [BR:
patr03009
]
EV46_03100
Enzymes [BR:
patr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EV46_03100
Messenger RNA biogenesis [BR:
patr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EV46_03100
Ribosome biogenesis [BR:
patr03009
]
Prokaryotic type
rRNA helicases
EV46_03100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIA69596
LinkDB
All DBs
Position
674266..676188
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AA seq
640 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAT
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLAIPEVELPNAELLGQRRLAKFAAKVQLQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPEPAFRPRREFRDRDESRSDSRGDRRREPRDARDARDSREPR
DGDRPQRRERRESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHST
IELPKGMPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGSRPAGAGTGGERRDGAAP
RRSFGGGERREGNANGGERRERSVNRDAAPRAPRRRPADA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaatgcc
ctgaccgatctgggctatgaaaaaccatcgccgattcaggctgaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggcagtggtaaaactgcggctttt
gctctgccattactcaataatttaaaacctgagttaaaagcgccgcagatgttggtgttg
gctccaacccgtgaactggctgttcaggttgctgaagcttgtagtgattttgccaagcat
atgcacggcgttaacgttgttgcactgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtggtggagcacagattgttgttggtactccaggtcgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagtggtctggtactggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctacg
catcaaactgcactgttctctgcaaccatgccagaagcgattcgccgcattacgcgtcgt
ttcatgaaagatccacaggaagttcgcatccaatcaagcgtgactacgcgtccagacatc
agccagagctactggacggtgcaaggtatgcgtaaaaatgaagcgctggttcgtttcctt
gaagctgaagattttgatgcggcgattattttcgttcgtaccaagaatgctacgctggaa
gtggccgaagcgttggaacgtagtggttataacagtgccgcgctaaacggtgacatgaac
caagcgctgcgtgagcaaacgctggagcgcctgaaagatggtcgtctggatatcctgatt
gcgaccgacgttgcggcgcgtggtctggacgttgagcgtatcagtctggtagtcaactac
gatatcccgatggactccgagtcttacgtgcaccgtattggtcgtaccggtcgtgctggt
cgtgctggtcgcgcattgctgtttgtagaaaaccgcgagcgtcgcctgctgcgcaacgtt
gaacgcacaatgaagctggcgattcctgaagtggaattgccaaatgcggaattgttgggg
caacgccgtctggctaaatttgctgcaaaagtacagctacagctggaaagcagcgacttg
gatatgtaccgcgctctgctgacgaagctgcaaccgcaggaagagctggatatcgaaacg
ctggctgctgctctgctgaaaatggcgcagggtgaacgtcctctgattctgccgccggaa
ccggcattccgtcctcgccgcgaattccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgtgaaccccgcgatgctcgcgatgctcgcgattcccgtgaaccccgt
gacggtgaccgtccacaacgccgtgagcgtcgtgagtcgggtgaaatggaactgtatcgt
atcgaagtgggtcgtgatgacggtgttgaagtacgtcatatcgttggtgctatcgccaac
gaaggtgatatcagcagccgctacatcggtaacatcaagctgttcgggtctcattcgacg
atcgaactgccgaaaggtatgccgggcgacctgctatcacactttacccgcacgcgtatt
ctgaacaaaccaatgaatatgcaattgctgggtgatgcagtagcacagccagaacgtcgt
ggcggcagccgtcctgctggtgctggtacgggtggtgaacgtcgtgatggcgcagctcca
cgtcgctctttcggtggtggtgaacgccgtgaaggtaacgctaacggcggtgagcgtcgt
gaacgttctgtcaaccgtgatgcggcaccgcgtgctccacgtcgtcgtcctgctgacgcg
taa
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