Pectobacterium atrosepticum JG10-08: EV46_09435
Help
Entry
EV46_09435 CDS
T03199
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
patr03016
]
EV46_09435
Enzymes [BR:
patr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EV46_09435
Transfer RNA biogenesis [BR:
patr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EV46_09435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AIA70799
LinkDB
All DBs
Position
complement(2146975..2148909)
Genome browser
AA seq
644 aa
AA seq
DB search
MFQDNPLLAQLKQQLHSKTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKDREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKEAIPCRAARDVTD
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERSAPEVETT
ERHDGELVREDLTALNFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVDAGSE
LDNIARQRAFTNYLPGFNIPMLPRALSDDICSLRPNERRPVLACRVTIAADGALGDDIHF
FAASIESKAKLAYDNVSDWLENQGEWQPQNEEIAEQIRLLHRLCLARSEWRTTHALVFKD
RPDYRFLLGEKGEVLDIVVEHRRIANRIVEESMIAANVCAAIVLRDKLGFGIYNVHNGFD
PASIEQAVAVLDTHGVQADAQTLLTLDGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDIRFNAEIIDVTRGGLRVRLLDNGAVVFIPSSFIHAVRDE
LVCSQEMGTLSVKGEVVYRQGDTLDVIIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctaagacaccg
cgtgttgaaggtgtcgtcaaaggtaccgataagggatttggctttcttgaagctgacgga
caaaaaagctatttcattccgcctccacacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagatcgggaaattgtcgagccagaaacgctgatcgaa
cctttccttacccgatttgttgggcgtatccataaaaaagacgatcgcttatcaattacg
cctgaccacccgctgctgaaagaggcgattccctgccgagccgcgcgtgatgttacagac
gattttcaggaaggcgattgggccgtagctgaaatgcgtcgtcacccgttgaagggcgat
cgtggatttcatgccgagctgacgcagtacatcaccacgggcgatgacccactggtgccg
tggtgggtgacgttgtcacgccacaatttggagcgttctgccccagaagttgaaaccact
gaacgccatgatggcgaactcgtccgtgaagatctgacggcactgaactttgtcaccatc
gacagcgccagcaccgaagatatggacgatgcactgtatgtgcaggacaacggtgatggt
tcactgcaattaacgatcgctatcgccgacccaaccgcctatgtggatgcaggcagcgag
ttggacaacattgcacgccagcgcgccttcaccaactatttgcccggcttcaacatcccg
atgctgccgcgcgcgctgtcggacgatatctgttccctgcgcccgaacgagcgtcgccct
gttctcgcctgccgcgtgacgattgccgctgacggtgcgctgggtgacgatatccacttc
tttgccgcctcgatcgaatccaaagccaaattagcgtatgacaacgtctctgactggttg
gaaaaccaaggcgaatggcagccgcagaacgaagagattgccgaacaaatccgtttgctg
catcgcctctgtctggcacgcagtgaatggcgcaccacacacgcgctggtgtttaaagat
cgcccggattatcgcttcctgctgggtgaaaaaggcgaagtgttggatatcgtagttgaa
caccgtcgcatcgctaaccgtatcgttgaagaatcaatgattgcagccaacgtctgcgca
gccattgtgctgcgcgacaagctgggctttggcatctataacgtgcataacggcttcgat
cctgcctcgattgaacaagcggtcgccgtactggacacgcatggcgttcaggccgacgcg
cagacgctgttgacgctcgatggcttctgcacgctgcgccgcgagctggatgcccagccg
acgcagttcctggatagccgtatccgtcgcttccagtcatttgcagaagtcagcaccaca
ccggggccacactttggtctggggctggaagcttatgccacctggacatccccgatccgt
aaatacggcgatatggtgaaccaccgtttgctgaaagcgattatcaccggacaggccgcg
gaaaaaccgcaggacgacgtcacggtacaactggccgagcgccgtcgccttaaccgtatg
gctgagcgtgatgtcggtgactggctgtatgctcgctaccttaaggataaagcaggtaca
gatattcgcttcaacgcggaaatcattgacgtcacgcgcggtggcctgcgcgttcgcctt
ttagataacggcgcggtggtgtttattccgtcatcctttatccacgccgtgcgcgatgaa
ctggtgtgcagccaggaaatgggtaccctctcggtaaaaggcgaagtggtttatcgtcag
ggggatacgctggacgtcatcatcgctgaagttcgtctggaaacccgcagcatcgtggca
aaacctgccgcataa
DBGET
integrated database retrieval system
