Pectobacterium atrosepticum JG10-08: EV46_12385
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Entry
EV46_12385 CDS
T03199
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
EV46_12385 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
patr03400
]
EV46_12385 (sbcB)
Enzymes [BR:
patr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
EV46_12385 (sbcB)
DNA repair and recombination proteins [BR:
patr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
EV46_12385 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EV46_12385 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EV46_12385 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AIA71365
LinkDB
All DBs
Position
2814011..2815438
Genome browser
AA seq
475 aa
AA seq
DB search
MADKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPE
AVMITGITPQIALSKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD
PYACSWQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHD
AMSDVYATIAMAKLFKQAQPKLFEYLFPLRNKNKISVLIDIPQMKPLVHVSGMFGAARSN
TSWIVPLAWHPDNRNAVIMCDLAGDMTPLLELDSEALRERLYTRRDALTADQSAVPLKLV
HINKCPVLAPANTLRPEDAARLGIDRQRCLDNLALLRNNADIREKVVALFAEAPAFAASD
DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDD
REQQRWLQHRRAVFTSERLQSYLSELSDLYQLHENDKEKMAQLKALYAYAQELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaacacaacccacttttttcattcatgattacgagacatttggcaaacac
ccagcgcgcgatcgccccgcgcagtttgcgggtgtccgtaccgatatggatttcaatatc
atcggtgagccgttggttatttattgtcgcccgaccgatgattacctgccggagccagaa
gcggtgatgatcaccggaatcactccgcagatcgcattgtcgaaaggcgtcaatgaagcc
gagttcgcccgtcagatccacgacgcattcagcgtgcccggcacctgcattatgggctac
aacaacatccgctttgatgatgaagtcagccgtaatattttctatcgtaacttctacgat
ccttacgcctgcagctggcagaacggtaattctcgctgggatttgctggatgcgctacgc
gcctgctatgccctgcgaccggaaggcatcgtctggcccgaaaacgatgacggcttaccc
agtttccgtcttgaacatctgacgaaagccaacggtattgcgcacgagcaagcgcatgat
gcgatgtccgacgtttatgccaccatcgcgatggcgaaactgttcaagcaggcgcagccc
aagcttttcgagtatctttttccgctgcgcaataaaaacaaaatttccgtactgatcgat
atcccacaaatgaagccgctcgttcacgtctccggtatgtttggcgcggcgagaagcaat
accagttggattgtgccgctcgcctggcatccggataaccgtaatgcggtcatcatgtgc
gatctggctggcgatatgacaccgctgctggagttggacagcgaggcattacgtgaacgg
ttatatacgcgccgagatgcgctgactgccgatcaaagcgcagttccgctcaagctggtg
cacatcaataaatgcccagtattagcgccagctaataccttacggccggaggatgcggca
aggttgggcatcgaccgtcaacgctgtctggataatctggcgctgctgcgtaacaacgca
gacatcagggagaaagtggtagcgttgtttgccgaagcccccgcctttgccgcgtctgat
gatgtcgatttacggctttatgatggcttctttggcgatgccgaccgcatggcgatgaag
attattcaggagaccgcgccgcagaatctccctgcgttagatctcacgtttgccgataat
cgtctggagccacttttcttccgctaccgcgcccgcaatttccccggtacgctggatgac
cgcgagcaacagcgttggctacagcatcggcgtgcagtatttacgtcggaacgcttgcag
tcctacctgtcagaactcagcgatctgtatcagcttcatgaaaacgataaagagaagatg
gcacagctcaaagcgctttacgcctatgcgcaggaactggtgggataa
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