Pectobacterium atrosepticum JG10-08: EV46_16295
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Entry
EV46_16295 CDS
T03199
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
patr03009
]
EV46_16295
Enzymes [BR:
patr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EV46_16295
Ribosome biogenesis [BR:
patr03009
]
Prokaryotic type
rRNA helicases
EV46_16295
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIA72108
LinkDB
All DBs
Position
3660979..3662304
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AA seq
441 aa
AA seq
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MTVTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRVLILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGNAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRADDLKHKTTLLC
HQLKQPDVTRSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVN
VLVATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLL
GKISRYLNEPLKPRVIEELRPETKAPSAKTTGKPSKKVLAKRKEKKEKEKEKVKVKVRDR
DSKNVGKRRQATQKTDEPSAE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgagctcgatcttgatgaaagcctgttagacgccctgcgt
gatatgggttatgaacgtccgactgcgattcaagccgaggcaatccctccggcgatggaa
ggccgtgacgtactgggctccgcgccaacaggaacaggtaaaaccgccgcttatctgctg
ccggttttgcagcatcttatcgattttcctcgtaaaaaatcaggtccacctcgtgttctg
atcctcacgccgacccgtgaactcgccatgcaggtggcggatcaagcgcgagcattcgcg
gcgcatacgcatctggatatcgcgacaatcactggcggcgtggcctacatgaatcatgcg
gaagtgttcagtgaaaatcaggatgtcgtcgtcgcgacgacgggccgtctgatgcaatac
atcaaagaagaaaacttcgattgccgcgcggtagaaacgctgattctggacgaagcggac
agaatgctggatatgggcttcgcccaggatattgaacacatcgccggagaaacccgctgg
cgcaagcaaacgctgctgttttctgcgacgttggaaggaaacgcgatcaaggatttcgcc
gagcgtctgctcaacgaacccgttgaaatcgagtccgatccatcacgtcgggaacgtaaa
aaaattctgcaatggtattaccgtgccgacgatctcaaacacaaaacgaccctgctctgc
catcagttaaaacagccagatgttacgcgttctatcatctttgtgcgcaagcgtgagcgg
gtgcatgagctcgtatcctggctgcatgaagctggcattaactcatgctatctcgaaggc
gaaatggtgcaagccaagcgcaacgaggcaatcaaacgcatgagcgacggtcgggttaac
gtgctggtggcaacagatatcgccgcgcgtggcatcgatattgacgatgtcagccacgta
tttaacttcgacttgccgcgcacagcagatacttaccttcaccgtatcggccgcactggc
cgcgcgggtcgtaaaggctgtgccatctctttcgttgaagcacacgatcacctgctgctg
ggaaaaatcagccgctacttgaatgagccgctaaaaccgcgcgtcattgaggaacttcgc
ccagagaccaaagcgccaagcgccaaaaccacgggcaaaccgtcgaaaaaagtgctcgcg
aagcggaaagagaaaaaagagaaggaaaaagaaaaagttaaagtgaaggttcgcgatcgc
gacagtaaaaatgttggtaagcgtcgtcaagcaacgcagaaaactgacgaaccgtccgct
gaataa
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