Pectobacterium atrosepticum JG10-08: EV46_16460
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Entry
EV46_16460 CDS
T03199
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
patr03019
]
EV46_16460
Enzymes [BR:
patr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EV46_16460
Messenger RNA biogenesis [BR:
patr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EV46_16460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
ResIII
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIA72135
LinkDB
All DBs
Position
complement(3693610..3696090)
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AA seq
826 aa
AA seq
DB search
MILPPVSAVLDDVITALHTAPQVLLNAPTGAGKSTWLPLQLLQQGNVNGRIIMLEPRRLA
AKSVAWRLAQQLGEELGQTIGYRMRSESRVSAATKLEVVTEGMLTRLLQQDAELQGVGLI
ILDEFHERSVQADLALALLLDVQQGLRDDLTLLIMSATLDNARLSALLPEAICVVSEGRS
YPVERCYAPLNSQDRFEEGVARQVRRLLNEEAGSLLLFLPGVAEIRRVQALLENSVSSET
DLCPLYGALTLAEQQKAILPAERGRRKVVLATNIAETSLTIEGIRLVMDSGLERVASFDV
KSGVTRLVTQRISQASMVQRAGRAGRLSPGICWHLCSREQAERAAAQSEAEILNSDLSSV
WLDLLQWGCTDVAQLTWLDTPPAPALYAARQLLCQLGITDDQGRLTAEGRKIAALGCDAR
LATMLYAASQQSAEALATAGCLAAILEEPPRSGSINLADWLHRPLPHWLRRAKQLTRRLS
TASGHIADFGHIDSGEADWLLAQAFPDRIARRRSQDGRYQLANGSGAMMSADEALSGNEW
LLAPALLQNDRLMQNKQSADARILLALPLDIERLERRLPGLINERNVVHWDEEKGTLRAS
QRDQIGCLILRRRPLNKPSDEVLQQAMLSWIREQGLKALNWDAAALQLRARLQCAHQWLN
EVDWPRVDDDTLLATLDIWLQPSLSGVRDLRALHQINLSDALLRRLDWSLRQRLDSALPT
HYTAPGGSRLPIAYYDDKPPVLSVRMQEMFGEQKSPLLAEGRVALVLELLSPAQRPLQIT
RDLAAFWQGTYREVQKEMKGRYPKHIWPDDPANTAPTRRTKKYQNH
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
gtgattttaccgcccgttagcgccgtgttggatgatgtgataacggcgctacataccgcg
cctcaggtgctgctcaatgccccaacgggggcggggaaatcaacctggctaccgttgcaa
ttgctgcaacagggcaacgtgaatgggcgcatcatcatgctggagccacgccgtttggcg
gcgaagagtgttgcctggcgtttggcgcaacagttgggtgaagagctaggtcaaacgata
ggttatcgcatgcggtcggaaagccgcgtgagtgcagcaacgaagctggaagtcgtcacc
gaagggatgttgacccgtttactgcaacaggatgcggaactgcaaggcgtagggctgatc
atccttgatgaatttcatgaacgcagcgtgcaggccgatttggcattggcgctgctgctg
gatgtgcaacaggggctgcgtgacgatttaacgctgctgattatgtctgcgacgctcgac
aatgcgcggctatcagcgctattgccggaagccatctgcgtggtttccgaaggtcgcagc
tatccagtagaacggtgttatgcaccgctaaatagccaggatcgctttgaagaaggcgtt
gcgcgacaggtgcgacgtttgctcaatgaagaggctggttcgctgctgttgtttttgccc
ggtgtggctgaaattcgccgcgtgcaggcactgctggaaaatagcgtgtcgagcgagacc
gacctttgtcctttatatggcgcactgacgctggcggaacagcaaaaggccattctgcct
gcggagcggggccgtcgcaaggtggtgttagccaccaacatagctgaaaccagtctgaca
attgaagggattcgactggtgatggacagcggccttgaacgcgtagcgagcttcgatgtg
aaaagcggcgtaactcggctggtgacgcaacgaatcagtcaggcctcaatggtgcagcgt
gcggggcgtgcggggcgtttaagccccggtatttgctggcacttgtgctctcgcgaacag
gcagaacgtgcggcggctcaaagcgaagccgagatactgaatagcgatttaagcagcgtc
tggctggatttattacagtggggctgtaccgatgtggcgcagttaacctggctggatacg
ccccccgcccccgcgctttatgccgcacgacaactactatgccagcttggtattaccgat
gaccaaggtcggttgaccgccgagggtcggaaaatcgcagcactcggctgcgatgcccga
ctggcgacgatgctgtatgccgcgtcacagcagagtgcagaggcgttggcgaccgctgga
tgtctggcggcgatactcgaagagccgccgcgtagcggatcgatcaatctggctgactgg
ctgcatcgtccattaccgcactggctgcggcgagcgaaacagctgacgcgccgtttatcg
acggcttcgggacatattgctgattttggtcatattgatagcggcgaagccgattggctg
ctggcacaggctttccctgatcgtatcgcccggcggcgcagtcaggatggacgttaccag
ctcgctaacggtagcggcgcgatgatgtcggctgatgaagcgttgtcaggtaacgagtgg
ctgctggcacccgcgctattacaaaacgatcgattaatgcaaaacaagcagagcgcagat
gcgcgaatcctgctggcgttgccgctggatattgagcggctggaacggcgactgcctgga
ttaataaatgagcgtaacgtggtgcactgggacgaagaaaagggtactctgcgcgccagc
cagcgcgaccagataggttgcctgattctgcggaggcgcccgttgaacaagccttccgat
gaggtattgcagcaggcgatgttatcctggattcgggagcaggggctcaaggcattaaac
tgggacgctgcagcgttacagttacgcgctcgcctacagtgtgctcaccagtggttgaat
gaggttgactggccgcgagtggatgacgacacactgctggcgacgctggatatctggtta
cagccgtcgctgtccggcgtgcgggatttacgtgcgctgcaccagattaatttgagcgat
gcgctgctgcgacggttggactggtcgctgcgccagcggctggatagcgcattgcctacg
cattatacggcacctggcggcagtcgcttgcctatcgcttattatgacgataagccaccg
gtgctgtcggtacggatgcaggagatgttcggcgagcagaagagtccgcttctggcggaa
ggccgtgtggcgctggtgttggaacttttatcgccagcacagcgtccactacagattacg
cgagatttagcggcgttttggcaaggcacgtaccgtgaggtgcaaaaagagatgaagggg
cgttaccccaagcatatctggccggacgatccggcaaatacggctccaacgagacgtacc
aaaaaatatcagaatcactaa
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