KEGG   Pectobacterium atrosepticum JG10-08: EV46_19300
Entry
EV46_19300        CDS       T03199                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
patr  Pectobacterium atrosepticum JG10-08
Pathway
patr02024  Quorum sensing
patr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:patr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EV46_19300 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    EV46_19300 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:patr03019]
    EV46_19300 (hfq)
   03036 Chromosome and associated proteins [BR:patr03036]
    EV46_19300 (hfq)
Messenger RNA biogenesis [BR:patr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     EV46_19300 (hfq)
Chromosome and associated proteins [BR:patr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    EV46_19300 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AIA72667
LinkDB
Position
complement(4317495..4317794)
AA seq 99 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPGGSNNYHGSNTTAQQQSQDADDAE
NT seq 300 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcttgaacgctttgcgtcgtgaacgtgtt
ccggtttcgatttatttggtgaacggtattaagttgcaaggtcagatcgagtcttttgat
cagttcgtgattttgttgaaaaacacggtaagtcagatggtttataagcacgccatctct
acagttgttccctctcgcccagtctctcaccatagcaataatccaggcggcagcaacaac
tatcacggtagtaacacgactgctcagcagcagtcgcaggatgctgatgacgccgaataa

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