Pectobacterium atrosepticum JG10-08: EV46_20780
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Entry
EV46_20780 CDS
T03199
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EV46_20780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
patr03019
]
EV46_20780
03400 DNA repair and recombination proteins [BR:
patr03400
]
EV46_20780
Enzymes [BR:
patr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EV46_20780
Messenger RNA biogenesis [BR:
patr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EV46_20780
DNA repair and recombination proteins [BR:
patr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EV46_20780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AIA72946
LinkDB
All DBs
Position
complement(4613372..4615198)
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AA seq
608 aa
AA seq
DB search
MSTAEVLNKEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQFEVMAGCRTGQIKLLY
IAPERLTTESFLDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIAL
TATADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPLDQLWMFVQAQRGKSGI
IYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEACGNCDICLDPPKRYDGLVEAQKAL
SCVYRVGQRFGIGYIVEVLRGANNQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLG
LLNQNITMHSAVQLTEPARPVLRGEMPLQLAVPRVINLKPRANQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMAELMPITAGELLNINGVGHRKLERFGAPFMNMIR
DHVDNDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggaagtattgaataaggaagcgctggcggttcaggttctacgggacacg
ttcggctaccagcaattccgaccgggtcagcaggaaattatcagcgcgacgctcagtggg
caggattgtctggttatcatgccgacaggcggcggtaaatcgctgtgctaccaaatcccc
gctctggtgatggacgggctgacgctggtggtatccccgctgatttctctgatgaaagat
caggttgatcagcttcaggcctatggtgtctccgccgcttgcctcaattcgacgcagacg
cgtgaacagcagtttgaagtgatggcgggctgtcgtactggtcagattaagttgctttat
attgcgccggaacgcctgacgacagaaagctttctcgatcatctcgcccactggcagatt
tcactgatcgcggtggatgaagcgcactgtatttcccaatggggccacgatttccgccct
gaataccgagcgctggggcagattaaacagcgttttcctcaccttcctttcattgcactg
acggccaccgccgacgagaccacgcggaacgatatcgttcgcctgttggatcttcagtcg
ccgctgatccagatcagcagttttgaccgcccgaatattcgctacacgctggtggagaag
ttcaaaccgctcgatcagctctggatgttcgtgcaggcgcagcgcggaaaaagcggcatc
atttactgtaatagccgttcccgcgtggaagatatcagcgcccgtttgcaggcccgtggg
ctgagtgcgggggcttatcacgccgggctggacaatgaacgacgcgcacaggtacaggaa
gcgttcctgcgtgacgatcttcaggtggtggtagcgactgtcgcgtttggtatgggtatc
aacaagcctaacgtgcggttcgtagtgcattttgatattccgcgcaatatcgaatcctac
tatcaggaaacgggacgtgccgggcgtgatggcctcgccgcagaagccgcgctgttttac
gatccggcggatatggcatggctgcgtcgctgtctggaagaaaaacccgccgggccgcag
ttggatattgaacgtcataagctcaatgcgatgggcgcgtttgccgaggcgcagacctgc
cgccgtctggtgctgctgaactatttcggtgaagggcgccaagaggcctgcggtaactgc
gatatttgtctcgatccgccgaagcgttacgatgggctggttgaggcgcaaaaggcgctc
tcctgcgtgtatcgggtcgggcagcgctttggcataggatatatcgtcgaggtgttgcgc
ggtgcgaataaccaacgtattcgcgacttcggccatgacaaattgccggtttatggcatt
ggtaaggataaatcgcaggaacattgggtcagcgtgctacgccaactgattcatctgggg
ttgttgaaccagaatattacgatgcattctgccgtacagcttaccgaacctgcgcgccca
gtattgcggggagaaatgccgctgcaactggccgtgccgcgtgtgattaacctgaagccc
cgcgctaatcaaaaatcttacggcggaaattacgaccgcaagctgtttgccaaattgcgt
aaactgcgtaaatccatcgcggacgaagacaatattccgccttacgtggtgttcagtgat
gccacgctgctggagatggcggaactgatgccgatcaccgcgggcgaactgctgaatatc
aacggggtaggacaccgcaaactcgaacgtttcggtgcacctttcatgaacatgattcgc
gatcatgtcgataatgacgacgagtga
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