Pectobacterium atrosepticum JG10-08: EV46_21005
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Entry
EV46_21005 CDS
T03199
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EV46_21005 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
patr03021
]
EV46_21005 (rho)
03019 Messenger RNA biogenesis [BR:
patr03019
]
EV46_21005 (rho)
Transcription machinery [BR:
patr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EV46_21005 (rho)
Messenger RNA biogenesis [BR:
patr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EV46_21005 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIA72986
LinkDB
All DBs
Position
complement(4658550..4659809)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaattactcttggcgaaaat
atggggcttgaaaatcaggcccgcatgcgtaaacaggatattatcttcgctatcctgaag
cagcatgccaaaagcggcgaggatattttcggcgacggtgtgctggagatattgcaggat
ggcttcggctttcttcgctccggagacagctcctacctcgcaggccccgatgatatctac
gtttctcctagccaaatccgccgctttaacctccgcactggtgacaccatttctggcaag
attcgtccgccaaaagaaggtgaacgttactttgcgctgttgaaagttaacgaagtcaac
tacgacaaacctgaaaacgcccgcaataagatcctgttcgaaaacttaacaccgctgcat
gcaaactctcgtctgcgtatggaacgtggtaacggttcgacagaggatctgacggcgcgc
gtgctggatctggcttcgcctattggccgtggtcaacgtggcctgattgttgcgccgccg
aaagcgggtaaaaccatgctgctgcaaaacatcgcgcagagcattgcttacaaccatcct
gactgtgtgctgatggtgctgctgattgacgaacgtccggaagaagttaccgagatgcag
cgtctggtgaaaggcgaagtcattgcgtcaacgtttgacgagccagcttcccgtcacgtt
caggttgctgaaatggtgatcgagaaagcgaagcgtctggttgagcataaaaaagacgtt
atcatcctgctggactccattacccgtttggcgcgtgcatataacaccgttgttccggcc
tccggcaaagtgttgaccggtggtgtggatgctaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcacgtaacgttgaggaaggcggtagcctgacaatcatcgccaccgcgctg
gttgataccggttccaagatggatgaagtgatttacgaagagtttaaaggtacaggtaac
atggaactgcacctggctcgtaaaatcgcagaaaaacgcgtattcccagcgattgattac
aatcgttctggtacgcgtaaagaagagttacttaccacctctgaagaattgcagaagatg
tggattctacgtaagatcatccacccaatgggcgagattgatgcgatggaattcctcatc
aataagttggcgatgacgaaaaccaacgatgaattcttcgatatgatgaaacgttcataa
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