Pseudomonas aeruginosa UCBPP-PA14: PA14_65200
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Entry
PA14_65200 CDS
T00401
Symbol
rnr
Name
(GenBank) exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pau
Pseudomonas aeruginosa UCBPP-PA14
Pathway
pau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA14_65200 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pau03019
]
PA14_65200 (rnr)
03016 Transfer RNA biogenesis [BR:
pau03016
]
PA14_65200 (rnr)
Enzymes [BR:
pau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PA14_65200 (rnr)
Messenger RNA biogenesis [BR:
pau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PA14_65200 (rnr)
Transfer RNA biogenesis [BR:
pau03016
]
Prokaryotic type
tRNA degradation factors
PA14_65200 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
MCM5_C
Motif
Other DBs
NCBI-ProteinID:
ABJ14322
UniProt:
A0A0H2ZI34
LinkDB
All DBs
Position
complement(5810076..5812799)
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AA seq
907 aa
AA seq
DB search
MADWQNLDPEAAREAEKYENPIPSRELILAHLSERGAPATRSQLLDEFGLAGEEPEEALR
RRLRAMERDGQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDDLFLSPTQMR
LVFDGDRALARVSGHDRRGRREGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEV
LIPPGKAGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHV
WPAAVEKEAAKLKPEVAEKDKEKRVDLRQVPFVTIDGEDARDFDDAVYAEAKRGGGWRLF
VAIADVSHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCE
MTLSKAGKLTGYQFYEAVIHSHARLTYTKVSQLLEHPDSVEAENLRQQLPGVVPHLQQLY
ALYKALLAGRHVRGAIDFETQETRIVFGADRKISEIRPTQRNDAHRLIEECMLCANVATA
RFLQKHAIPALYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIHDRA
DFRLIQTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKA
ETPHVQRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERV
GETFPGVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLG
DTTEVVVARVDLDERKIDFELAGNVLSAPIGRKKRNGDKSANAGKAPKGRKGASVPEVDL
EPALASPDAAVVPRRKAGKVQALPPVAPELLAQAAEMLGNTDVRKSREVKQALLAEARVG
GKDKGGKKGKVVPAGKSAKGKAKDGKPAAAAKPGKPGKPTKHRKGPSKPKADNAPAVTGA
RKRKAKS
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaaacctcgatcccgaggccgctcgcgaagcggaaaagtacgaaaac
cccatccccagccgggaactgatcctggctcacctatccgagcgaggcgctcctgcgact
cgctcccagttgctcgacgagttcgggctcgccggcgaggagccggaagaggccttgcgt
cgtcgcctgcgcgccatggagcgcgacggacagcttatctatacgcgtcgtggcgcctac
gcgccggtggacaagctggacctgatccgcggccgcatcagcgggcaccgcgatggcttc
ggcttcctgatccccgacgatggcagcgacgacctgttcctcagccccacccagatgcgc
ctggtgttcgacggcgaccgcgccctggcccgggtgtccggccatgaccggcgcggacgc
cgcgaaggccaactggtcgaggtgatcgagcgggcccacgagatcgtggtcggccgctac
ttcgaggaaagcggcatcggcgtggtggtcgcggacaacccgaagatccagcaggaagtc
ctgatcccgccgggcaaggccggcaaggccaggcacaaccagttcgtccaggtgcgcatc
gagcaatggccgagcatccaccgccaggcccagggcgagatcgtcgaggtgctcggcgac
tacatggcgccagggatggagatcgaagtcgccctgcgcagctacgatatcccccacgtc
tggccggccgcggtggagaaggaagcggccaagctcaagccggaagtggcggagaaggac
aaggaaaagcgtgtcgacctgcgccaggtgcccttcgtcaccatcgacggcgaggatgcc
cgcgacttcgacgacgcggtgtacgccgaggccaagcgcggcggcggctggcgcctgttc
gtggcgatcgccgatgtctcgcactacgtgaaggtcggttcggcgctggacgaagaggcg
gccaggcgcggcaactcggtgtatttccccgagcgggtgatcccgatgctgccggaggtg
ctgtccaatggtctctgctcgctgaatccgctggtcgaccggctggccatggtctgcgag
atgaccctgtccaaggccggcaagctgaccggctatcagttctacgaagcggtgatccac
tcccatgcgcgcctgacctacaccaaggtcagccagttgctcgagcatcccgacagcgtc
gaggccgagaacctgcgccagcagttgcccggcgtggtgccgcacctgcagcagctgtat
gcgctgtataaagcgctgctggccggccgccatgtccgcggcgcgatcgatttcgagacc
caggaaacccgcatcgtcttcggcgccgaccggaagatctcggaaatccgcccgacccag
cgcaacgatgcgcaccgcctgatcgaagagtgcatgctctgcgccaacgtggcgaccgca
cgcttcctgcagaagcacgccatcccggcgttgtaccgggtgcatgacggcccgccgcag
gaaaagctcaacaacctgcgccagttcctcggcgagctggggttgagcctcggccgcggc
aaggccgcgccgaccccgggcgactaccaggagttgctggagaagatccacgaccgcgcc
gacttccgcctgatccagacggtcatgctgcgttcgctcagccaggcggtgtacagcccg
gacaacaatggccacttcggcctcaactacgacgcctacacccacttcacctcgccgatc
cggcgctacccggacctgctggtgcatcgtgcgatccgcagtgtgatccgctccaaggcg
gagactccgcacgtgcagcgggccggcgcggcgagcatgcccaaggcgcgcatctatccg
tacgacgaattgcgcctggaccagttgggcgagcagtgctcgatgaccgagcggcgtgcc
gacgaggccacccgcgacgtgaccaactggctgaagtgcgaatacatgcgcgagcgggtc
ggcgagaccttccctggcgtaatcaccgcggtcaccggtttcggtctgttcgtcgagctg
accgacatcttcgtcgaaggcctggtgcatgtgaccgcgctgcccggcgattactatcat
ttcgacgccgtgcaccatcgcctcagcggcgagcgcaccgggcgcagcttccgtctcggc
gacaccacggaagtggtagtggcgcgggtcgacctggacgagcggaagatcgatttcgag
ctggccggaaacgtgctgagcgcgccgatcggacgcaagaagcgcaacggcgacaagtcg
gcgaacgccggcaaggcgccgaaggggcgcaagggcgcatccgtgcccgaggtcgacctg
gagccggcgctggccagtcccgacgccgcggtggtgccgcggcgcaaggccggcaaggtg
caggcgctgccgccggtcgcgccggagctgctggcgcaggccgcggagatgctcggcaac
accgacgtgcgcaagagtcgcgaggtgaagcaggcgctgctcgccgaggcgcgtgtcggc
ggcaaggacaagggcgggaagaagggcaaggtcgttcctgcgggcaagagcgcgaagggc
aaggccaaggacggcaagcccgccgctgccgccaagccgggcaagccgggcaagccgacc
aagcatcgcaaggggccttccaagccgaaggccgacaacgctccggccgtcaccggggcg
cgcaaacgtaaggccaagtcatga
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