Phragmites australis (common reed): 133883173
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Entry
133883173 CDS
T10575
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133883173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133883173
03019 Messenger RNA biogenesis [BR:
paua03019
]
133883173
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133883173
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133883173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
TFIIA
Motif
Other DBs
NCBI-GeneID:
133883173
NCBI-ProteinID:
XP_062178391
LinkDB
All DBs
Position
10:complement(3821295..3829989)
Genome browser
AA seq
652 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSVPAAGGGGPAPSSTDPGAGGGGDGPGLHGRGRGRGSYRQTVC
RHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYKMG
FCPNGPSCRYKHVKLPGPPPPVEEVLQKILQMRSFNKFGQHRNSNYNQQMDRPQHPQGSG
LPNQNSAENAAATAQPAGGQQAQTMNQQPPPPPQQQQQKPNTNDQVHGVSNGHQATRIAT
SLPEGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRH
FQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQKTHHLRNPYNDNLP
VKISRDCQELEPSIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDI
VLFDDNEEEEEEESEEEDESNGQESQGRGRGRGMMWPPQIPMMRGVGPMMGGRGFPPNLM
GDGFGFGGGFGMPDPFGVPRGFPPFGGPRFPGDFGRGGPMPGMVFPGRPPQPGGLFPMGL
DMMMGPGRGPLMGGMGMGGPGRPNRPMGMASFMPPPPPNNRAVKRDQRRPGGDRGDRYET
ASDQGSRGHDNTGNSGGDGARSQSGDRYGRSALRDDDSESEEEAAPRRSRKR
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggcctcagcttcgacttcgagggcggcctcgactcggtcccg
gcagccgggggcggtggccccgcgccgtcctctaccgaccccggcgctggcggcggcggg
gacgggccgggcctgcacgggcgcgggcgcggccgcgggagctaccggcagacggtgtgc
cggcactggctgcgcgggctgtgcatgaagggcgaggcgtgcgggttcctgcaccagttc
gacaaggcccgcatgcccgtgtgccgcttcttccgtgacttcggcgagtgccgcgagccc
gactgcgcgtacaagcactcgtacgatgacgtaaaggagtgcaacatgtacaagatggga
ttttgccccaatggtcctagttgccggtacaagcatgtcaagctacctgggccaccacct
cctgttgaggaagttctccagaagattttgcagatgcgctctttcaacaagttcggtcag
catagaaacagtaactataatcagcagatggacagacctcaacatccacagggttcaggg
ttgcctaaccaaaactcggcagaaaatgctgctgctacagctcaaccagctggtgggcaa
caagcacaaacgatgaatcaacagccaccgccgccgccgcagcagcagcagcagaagcca
aacacaaacgaccaggtccatggtgtttcaaatgggcatcaagccactagaattgccaca
tcccttccagaagggccatctaggtacttcattgttaaaagttgcaatcgggagaatttg
gaaatatcagttcagcagggaatttgggccactcagaggagtaacgaggctaaacttaac
gaagcgtttgaatccactgagaatgttattttaatattctcaattaatagaactcgccat
tttcagggatgtgcaaagatgacttctaggattggtggctacattggcggtggaaattgg
aaatctgctcatggaacggcgcactatggtcgaaatttctctatacaatggctcaagctt
tgtgagttgtcatttcagaaaactcatcatctgcgcaatccatacaatgataatctccct
gttaagatcagcagagattgccaggaattagaaccttccattggtgagcaattggcttcc
ctgctttatctagagccagacagtgaacttacggctatgctaattgcagcagaggccaag
agagaagaggaaaaggcaaagggagttagtgctgatgaagctgctgacaatcaagatatt
gtgctgtttgacgacaatgaagaagaggaggaagaggaaagtgaggaagaagacgaaagc
aatggccaagaatctcaaggaaggggaagaggaagggggatgatgtggccacctcaaata
ccaatgatgcgtggcgttgggccgatgatgggaggtcgtggcttccctcccaacctgatg
ggtgatggctttggttttggtggtggttttggcatgcctgatccttttggtgtgcctcgt
ggttttccaccattcggtggcccaaggtttcccggtgactttggcagaggaggtcctatg
cctggtatggtcttccccggcaggccaccgcaacctggaggcctcttccctatgggcctt
gacatgatgatgggtcctggtcgtggacctctcatgggaggcatgggaatgggcgggcct
ggacgacctaatcgtcccatgggcatggcttccttcatgcccccaccacctccaaacaac
cgtgctgtgaaacgggaccaaagaaggccaggtggtgaccggggtgacaggtacgagacg
gcatcggaccagggaagtaggggccatgataatactggcaattctggaggagacggagcc
aggtctcaatctggggacagatatggcagaagcgccctccgggatgatgacagcgagagc
gaagaggaagcggctccaaggcggtcaaggaaacgatag
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