Phragmites australis (common reed): 133883198
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Entry
133883198 CDS
T10575
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133883198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133883198
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133883198
mRNA degradation factors
5'-3' decay
Decapping complex
133883198
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
133883198
NCBI-ProteinID:
XP_062178418
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All DBs
Position
10:complement(4131674..4138367)
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AA seq
820 aa
AA seq
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MAALGGGGGMEESGLDDTRFDASQYAFFGYNVMEEIELGGLEDDNDSNAAFVGLNGVERP
LSSQENALEAEDIGLFSDVDDLANTFSKLRRDVNEPKHIGINNHGVLFSRESSTAADWAP
EFESLCWPDQYVLGAKQGKDGNGWWSQQHHSSHFADSRLHRTSSSPQQQEQHNPSEPVRG
PRPSPLHRTSSYPEKEPQYNPTEAIPALKLPYISHPPPGGPPNSLPGQPHQMNIPPFNEF
QMHMSAQSEAPLSQFPHGGTPPESLFGGNLDNIVSTGFSTNSSGLQNHLLNNGQFPKEAA
RIMPNLVQNHLQCPNGFVPPQMVPLRQQHGMFQIQQSPQHLARMQAQMFCPQHPPRMMNR
FDNFGMPELSDPRARSSMQHGRQGFRFPLQGSEFGTMRMDNGRPRFRSRYMSTEELENIS
RIQHAATHINDPYIDDYYHQACLARRSVDARLKHHFFPTLIRDPSSHARSKDEPHAYLKV
DALGRLPFSSIRRPRPLLDVEPASTTDDNTLERSVSKPLDQEPMLAARVTVEDGLCLLLD
IDDIDRLLQFSQQIDGGLQLRNRRQSLLGQLAESLQLVDPLGPNKTEHLSANDDLVFLRI
VSLPKGRKLLSRYLNLMVPGSDLARIACMAVFRHLRFVFGNLPSDCGSAETVTKLASAVA
ACICGMDLSGLSACLAEIVRSSEHPPLRPLGNAAGDGATAIIKSVLDRATELLTEQLAAS
NYSVPNRALWQASFNAFFGLLAKYCVSKFDSLVHTMHKHPAAATVISRELPIELLRASLP
HTDEQQRRLLLEFAQRSVPVTGHNSHGAAGGPMTSESVPS
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgctcggcggcggcggcggcatggaagagtcgggattagatgacaccagattt
gatgcatcacagtatgccttttttggctacaatgtgatggaggagattgaattgggtgga
ttggaagatgataatgacagcaacgctgctttcgttggactcaatggtgttgagcgccca
ctttcttctcaagagaatgcgctagaggctgaagatataggtttattttcagatgttgat
gatcttgctaatacattctcaaagctgagaagagatgttaatgaaccaaagcacattgga
ataaataaccatggggttcttttttcaagagaaagttctacagcagctgactgggctccg
gaatttgaatccttgtgctggcctgatcagtatgtgctaggcgcgaagcaagggaaggat
ggcaatggctggtggtctcaacaacatcattcttctcactttgctgattccagattgcac
agaacatcctcatcccctcagcaacaggaacaacacaatcctagtgaacctgttcgcgga
ccaaggccatctcctttgcaccggacatcctcatacccagaaaaggagcctcaatacaat
cctactgaagccattcctgctctaaaattaccatacatttcacaccctccacctggtggg
ccacccaattcattgcctggacaaccgcatcagatgaacattccacctttcaatgaattt
cagatgcatatgtctgcacaaagtgaagctccactctcccagttccctcatggagggaca
cctccagagtcattatttggtggaaacctggataatatagtttcaacaggcttttcaact
aacagcagtggactacaaaatcatctgctgaataatggacaatttcctaaggaagctgca
aggattatgcccaatttggtgcagaaccatctgcaatgtccaaatggatttgtcccccct
caaatggtcccattgcgccaacagcatggaatgttccaaattcagcaatctccgcaacac
ttagcaaggatgcaggcccagatgttttgtccccagcatccaccacgaatgatgaatagg
tttgataattttgggatgcctgagttgagcgatccaagggcaagatcatcaatgcaacat
ggaaggcaaggctttcgttttcctctgcaaggttctgaatttggtactatgaggatggat
aatgggaggccaaggtttagatccaggtacatgtctacggaagaacttgaaaacatttca
agaatacagcatgccgccactcacataaatgatccatacatcgatgattactaccaccaa
gcttgtctagccagaagatctgtggatgcaaggttgaagcaccacttcttcccaaccttg
atccgggatccatcttctcatgctcgcagcaaggatgagccacatgcataccttaaggtc
gatgcccttgggagactcccattttcttccatccggaggccacgtccacttcttgatgtt
gaaccagcttctacaactgatgataacactcttgaaaggtctgtttcaaagcctctggat
caggaacctatgctagctgctagggtcacagttgaggatggcctctgcctactacttgat
atagatgatattgatcgcttgctgcaatttagccagcagatagatggtggtctgcaactt
aggaacagaagacagtctctccttggtcagctggcagaatcacttcagttggttgatccg
ctaggtccaaataaaactgaacatttgtcagcaaatgatgatttggtattccttcgcata
gtttctctacctaagggtcggaaactactgtcccgctatctcaaccttatggttcctggt
agtgaccttgcacggatagcttgcatggcagtcttccggcatctgagatttgtgtttggc
aatttgccctctgattgtggttcagctgagacagttactaaactagccagtgctgtagct
gcatgtatttgtgggatggacttaagtggcctcagtgcttgtcttgcagaaattgtgcgc
tcgtcagagcatccgcctcttcgaccccttgggaatgctgctggtgatggggctactgcc
atcataaagtctgttctggacagggcgacagagcttcttactgagcagcttgctgcatca
aactacagtgttccaaaccgagccctatggcaagcatcgtttaatgctttttttgggctg
cttgcaaagtactgcgtaagtaaatttgacagcctggttcatacaatgcacaagcaccct
gctgctgcaacagtgataagcagggaactgcctattgagcttctgcgtgccagtcttcct
catacagatgagcaacagcgcagactattacttgagttcgcccaacggtctgtacctgtc
actgggcataattctcacggggctgctggtggacccatgacatctgaatcagtcccaagt
tga
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