Phragmites australis (common reed): 133883381
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Entry
133883381 CDS
T10575
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133883381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133883381
03036 Chromosome and associated proteins [BR:
paua03036
]
133883381
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133883381
Coactivators
SAGA/TFTC/STAGA complex
133883381
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133883381
STAGA complex
133883381
TFTC complex
133883381
SAGA complex
133883381
SLIK complex
133883381
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
DSE1_N
Beta-prop_Aladin
Beta-prop_VPS8
CFAP251_N
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_RIG_2nd
PAC11
ASA1
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Ge1_WD40
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Tricorn_2nd
SHKBP1_KCTD3_C
Beta-prop_NWD2_C
RecX_HTH3
Cytochrom_D1
Beta-prop_IP5PC_F
Beta-prop_ACSF4
Beta-prop_DCAF12
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
133883381
NCBI-ProteinID:
XP_062178678
LinkDB
All DBs
Position
10:7110818..7126856
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSALSDVALARSDNDPARYSDGYSRL
RTWAYSSLDQYKHELLRILYPVFIHCFMDLVAEGHMQEARSFFHTFREDHEVMHSRDLQK
LEGVLSPSHLEEMELARSVRQNKFKIKLCEYSYELLLQYLQKTQALVVLGIINEHVTFEV
SPGQPSLISDDVDVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALSESDKIEAES
KEADAEENKKRNSEGGKQSGSLKKVKKDKLTGATGKNIRAETSMVSVAPRVKPELTLPVT
PVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSMVVGGFSDSSVK
VWDMSKIGQPAKTSSSQGENGSSQGERISTLDEGKRPYTLFQGHSGPVYSAAFSPFGDFL
LSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSSVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVISLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGTLLASGSADCTVKLW
DVTSSTKALKMEDTKGGPTNRLRLLKALPTKSTPVYSLRFSRRNLLFAAGALSLSSL
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaagggcttccgc
ctcaccgagctagcgctgcaggaggagcgcaaccgcctctccacctccgcactctctgac
gtcgcgctcgccaggtctgataacgacccggcgagatactctgatggatatagtaggcta
agaacgtgggcatatagttctcttgatcaatacaagcatgaattacttcgcatcctgtac
ccagtttttatccattgcttcatggatctagtagcagagggacatatgcaggaagctcgg
tcgtttttccatacatttcgggaagatcatgaagtgatgcattcaagggaccttcagaag
ctcgaaggagttctctctccttcacatttggaggaaatggaactggctcgatctgtaagg
caaaataaatttaaaataaaattatgtgagtattcatatgaattgcttctccagtatctc
cagaaaacacaagctcttgtggtgcttggaataatcaatgagcacgtaacatttgaagta
tctcctgggcaaccctcactaatctctgatgatgtggacgttgttgctctgattggaaca
agtaaggacctggcaaaacagataaatcagaaggaagtacattgggggttgcttgaagat
tccgttgaagagcgaatggagaaggcactatcagaatctgataaaattgaagctgaaagc
aaggaagctgacgctgaagaaaacaagaaaagaaactcagaaggtgggaagcagagtggt
tctcttaagaaggtcaaaaaggataagcttacaggtgcaactggaaaaaacatcagagct
gagacaagcatggtttctgtggcacctcgggtgaaaccggagctaacacttcctgtgacg
cctgttgaagttgaacaatcgattcttgaggacttgagaaaccgtgcacaattgaatagc
ttggcattaccatctgttagcttctacacattccttaatacacataatggattgaactgc
tcatcaatatcacatgatggatcaatggttgtgggtgggttttctgactcgtcagtgaag
gtttgggatatgtcaaagattggtcaaccagcaaaaacatctagttctcagggagagaat
ggatcttcccagggtgagcgcatatcaacattagatgaggggaaaagaccctatacacta
ttccaaggtcattctggaccagtttattctgcggccttcagtccatttggggattttctc
ttgtcgtcttcttcagattcaacaattagactatggagcaccaagctgaatgccaatctt
gtctgttacaaaggacacaactatccggtttgggatgtacaattcagctcagttggacat
tactttgctagtgcttcacatgataggactgctagaatctggtcaatggataaaattcag
cctttacgaataatggctgggcatctttctgatgttgattgtgttcagtggcatgtaaac
tgtaactatattgccaccggttcaagtgacaaaactgtaagactatgggatgttcagact
ggtgaatgtatacggatgtttattggtcataggagtatggttatatcattggcaatgtct
cctgatgggcgatacatggcctccggagatgaagatggaaccatcatgatatgggatctt
tcgactggtcgctgcgtttcaccactcctgggacacagctcttgtgtgtggacacttgct
ttcagctgtgaagggacattgcttgcatctggatctgccgactgtactgtaaaactctgg
gatgtgacttccagcacaaaggccctgaagatggaggacaccaaaggtggtccaactaac
cgactgaggctgctaaaagctctccctacaaaatcaactcctgtttatagtctgcggttc
tctcggaggaaccttttatttgcggcaggtgccctctcgctaagctcgttgtaa
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