Phragmites australis (common reed): 133883381
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Entry
133883381 CDS
T10575
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133883381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133883381
03036 Chromosome and associated proteins [BR:
paua03036
]
133883381
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133883381
Coactivators
SAGA/TFTC/STAGA complex
133883381
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133883381
STAGA complex
133883381
TFTC complex
133883381
SAGA complex
133883381
SLIK complex
133883381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Ge1_WD40
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
RecX_HTH3
WD40_like
Cytochrom_D1
Beta-prop_IP5PC_F
Beta-prop_DCAF12
PALB2_WD40
VPS8_N
Motif
Other DBs
NCBI-GeneID:
133883381
NCBI-ProteinID:
XP_062178678
LinkDB
All DBs
Position
10:7110818..7126856
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSALSDVALARSDNDPARYSDGYSRL
RTWAYSSLDQYKHELLRILYPVFIHCFMDLVAEGHMQEARSFFHTFREDHEVMHSRDLQK
LEGVLSPSHLEEMELARSVRQNKFKIKLCEYSYELLLQYLQKTQALVVLGIINEHVTFEV
SPGQPSLISDDVDVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALSESDKIEAES
KEADAEENKKRNSEGGKQSGSLKKVKKDKLTGATGKNIRAETSMVSVAPRVKPELTLPVT
PVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSMVVGGFSDSSVK
VWDMSKIGQPAKTSSSQGENGSSQGERISTLDEGKRPYTLFQGHSGPVYSAAFSPFGDFL
LSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSSVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVISLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGTLLASGSADCTVKLW
DVTSSTKALKMEDTKGGPTNRLRLLKALPTKSTPVYSLRFSRRNLLFAAGALSLSSL
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaagggcttccgc
ctcaccgagctagcgctgcaggaggagcgcaaccgcctctccacctccgcactctctgac
gtcgcgctcgccaggtctgataacgacccggcgagatactctgatggatatagtaggcta
agaacgtgggcatatagttctcttgatcaatacaagcatgaattacttcgcatcctgtac
ccagtttttatccattgcttcatggatctagtagcagagggacatatgcaggaagctcgg
tcgtttttccatacatttcgggaagatcatgaagtgatgcattcaagggaccttcagaag
ctcgaaggagttctctctccttcacatttggaggaaatggaactggctcgatctgtaagg
caaaataaatttaaaataaaattatgtgagtattcatatgaattgcttctccagtatctc
cagaaaacacaagctcttgtggtgcttggaataatcaatgagcacgtaacatttgaagta
tctcctgggcaaccctcactaatctctgatgatgtggacgttgttgctctgattggaaca
agtaaggacctggcaaaacagataaatcagaaggaagtacattgggggttgcttgaagat
tccgttgaagagcgaatggagaaggcactatcagaatctgataaaattgaagctgaaagc
aaggaagctgacgctgaagaaaacaagaaaagaaactcagaaggtgggaagcagagtggt
tctcttaagaaggtcaaaaaggataagcttacaggtgcaactggaaaaaacatcagagct
gagacaagcatggtttctgtggcacctcgggtgaaaccggagctaacacttcctgtgacg
cctgttgaagttgaacaatcgattcttgaggacttgagaaaccgtgcacaattgaatagc
ttggcattaccatctgttagcttctacacattccttaatacacataatggattgaactgc
tcatcaatatcacatgatggatcaatggttgtgggtgggttttctgactcgtcagtgaag
gtttgggatatgtcaaagattggtcaaccagcaaaaacatctagttctcagggagagaat
ggatcttcccagggtgagcgcatatcaacattagatgaggggaaaagaccctatacacta
ttccaaggtcattctggaccagtttattctgcggccttcagtccatttggggattttctc
ttgtcgtcttcttcagattcaacaattagactatggagcaccaagctgaatgccaatctt
gtctgttacaaaggacacaactatccggtttgggatgtacaattcagctcagttggacat
tactttgctagtgcttcacatgataggactgctagaatctggtcaatggataaaattcag
cctttacgaataatggctgggcatctttctgatgttgattgtgttcagtggcatgtaaac
tgtaactatattgccaccggttcaagtgacaaaactgtaagactatgggatgttcagact
ggtgaatgtatacggatgtttattggtcataggagtatggttatatcattggcaatgtct
cctgatgggcgatacatggcctccggagatgaagatggaaccatcatgatatgggatctt
tcgactggtcgctgcgtttcaccactcctgggacacagctcttgtgtgtggacacttgct
ttcagctgtgaagggacattgcttgcatctggatctgccgactgtactgtaaaactctgg
gatgtgacttccagcacaaaggccctgaagatggaggacaccaaaggtggtccaactaac
cgactgaggctgctaaaagctctccctacaaaatcaactcctgtttatagtctgcggttc
tctcggaggaaccttttatttgcggcaggtgccctctcgctaagctcgttgtaa
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