Phragmites australis (common reed): 133884195
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Entry
133884195 CDS
T10575
Name
(RefSeq) probable CCR4-associated factor 1 homolog 10
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133884195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133884195
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133884195
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133884195
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133884195
NCBI-ProteinID:
XP_062179524
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All DBs
Position
11:complement(33738910..33740345)
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AA seq
401 aa
AA seq
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MDKGKRPAEDDSSGRSLRSESIRMTVETHDGYGTSHATASDLLRRGIAKGAEGVREVTAP
QTQLMPGEVLDLDERRLLVSRYAMPAQMNEWQMLHLGRASPFFQDMALSSFPPAVQLSPT
TGNPVLTSSSGGFLVFDVWAETVYEAFEDIRKLLQRGEGDEFMVGVDSEFAIPDGVVHSG
REPPTADLHYEQLCSMVNGGDLVQVGITITDPMFKVLGAWQFNLSFHTSWRAPWHAGVAF
LRDEAKLKLEEHASHGIPVALFIHLLAGSGMINNSSLTWVSYMGYPDFGFLVRLLTGPHA
LPASRLEFLMLFWQLFPRSYDVRVFSKLGRCGREVIAGGLATVCQTLGVQRAGKAHHAWS
DALSALQCLEKMASGDTDFARRMTRYSGVLYGVVVDARRHE
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggggaagcggcctgccgaagacgactcctctggacggtcgctgcgatcggag
agcatcaggatgacggtggagacacacgacggctacggaacctcccatgccaccgcctcg
gacttgcttcgccgagggatcgcgaagggcgcagagggcgtgcgggaggtgacggcgccg
caaacacagttgatgcccggcgaggttcttgatcttgacgagaggcgcttgctcgtcagc
cgctacgcaatgcccgctcagatgaatgagtggcagatgctgcatcttggcagagcctcc
ccattcttccaggacatggcgttgtcttcttttccgccggcggtgcagttgagtccaaca
acagggaatcctgttctcacctcgtcttccggcggctttcttgtgtttgatgtctgggct
gagacggtttacgaagcgtttgaggatatcagaaaactgctgcagagaggcgaaggtgac
gagtttatggtgggcgtcgactctgaatttgctatacccgacggtgtggtgcattcaggc
agggagccgcccacagccgacttgcactacgagcagctctgctcaatggtcaatggcggc
gacctcgttcaggtgggtatcacgattactgacccgatgttcaaggttctaggagcatgg
caattcaatttgagcttccacacttcatggcgcgccccatggcacgctggcgttgccttc
ctacgggacgaagccaagcttaagctggaggagcacgcaagccacggaataccagtagct
ctcttcatccatttgcttgcgggctcaggaatgatcaacaacagcagcttgacatgggta
agctacatgggctacccggattttgggtttctggtccgcctgttgacggggccgcatgct
ttgcctgcgagccgtctcgagttcctgatgctattctggcaactcttcccccgctcgtac
gatgtgcgtgtgttctcgaagctggggaggtgtggcagggaagtgatcgccggcggcctg
gcaaccgtgtgccagacgctgggtgtccagcgtgccgggaaggcccatcacgcatggtct
gacgcattgtcagccctgcagtgcctggagaagatggcaagcggagacaccgacttcgcc
agacgaatgactaggtactccggtgtcctatatggagtggtagtcgatgcccgtcggcat
gagtga
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