Phragmites australis (common reed): 133884434
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Entry
133884434 CDS
T10575
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133884434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133884434
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133884434
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Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
133884434
NCBI-ProteinID:
XP_062179831
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Position
11:4554283..4558367
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AA seq
429 aa
AA seq
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MEIQTSGKPIDLLMEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNHVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLK
DDEEFSPGSNGRNTTMGVYVRDLILGQYYFDSLLPRIPLPVTRQVTANLEKMKLPTKLSG
VTGDSSRQGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTVTHDDNRRSFSPS
RRSGSHEGPDRDHSDRELDRSNRDRDRDRSSRDRDRDRSSRDWDRDRDKDIRDYHRRERD
SRDRDYRSRHSEERQDDRRDRDSRDRDYRSRHSEERQDDRRDRDSNRHRRSSSRHRSRSR
SRSRSRNEQRSSPFGDANKEKTAVVSSNLAKLKDLYGDVTEKKQDGDAEKLRRDSCAEEV
IRLGGPKWR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagacttcagggaagcccattgatctgctgatggagaaggttctttgcatg
aacattctgtcttctgattactttaaggagctctacaggctgaagacctatcatgaggtc
attgatgagatttacaatcatgtcgatcacgtggagccttggatgactggcaattgcagg
ggcccctcgactgcattctgtctcctctacaagttcttcaccatgaagcttactgtcaaa
cagatgcacggtttgttgaagcatcctgactccccatacattagagctattggtttcttg
tatcttcgctatgttgcggacccaaagattctgtggacatggtacgagccctatctaaag
gacgatgaggaattctcccctggatctaatggccgcaatacaaccatgggtgtttatgtg
cgtgatcttatacttggacagtactactttgatagtcttcttccaagaattcctcttcca
gtaactcgtcaggttacagccaatcttgagaagatgaaattgcccacaaagctttctggg
gtgactggggactccagtcgacagggatcagaagatactgcacgtcgccctccttctgtg
aaagcttctctgtcagtttcctttggacagcgtgctccacatcgggcttccactagggat
tcatccccagttcggcgaacagtcacccatgatgataatcgaagatcattctcaccatct
cgtcgtagtggaagccatgagggtcctgaccgtgatcattctgaccgagaacttgaccgt
tctaaccgtgaccgtgaccgtgaccgctcgagccgtgaccgggacagggaccgttcgagc
cgtgactgggaccgagacagggacaaggatatcagagattatcatcgtcgtgagcgtgat
agcagggatcgtgattacaggtccaggcattcagaagaaaggcaagatgacagaagggat
cgtgatagcagggatcgtgattacaggtccaggcattcagaagaaaggcaagatgacaga
agagatcgtgatagcaacagacatagacgctctagctcccgtcataggagtagaagccgg
agtcgaagcaggagcaggaacgagcagcgatccagtccatttggggatgcaaataaagag
aagacagccgtcgtctcaagcaacctagcaaagctgaaggacttgtatggtgacgtaact
gagaagaagcaagatggtgatgccgaaaagcttcgtcgtgactcatgcgcagaggaggtc
atcaggctgggaggcccgaaatggaggtaa
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