Phragmites australis (common reed): 133884566
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Entry
133884566 CDS
T10575
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133884566
03036 Chromosome and associated proteins [BR:
paua03036
]
133884566
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
133884566
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
133884566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
SH2
Tex_N
NNH1
HHH_3
Motif
Other DBs
NCBI-GeneID:
133884566
NCBI-ProteinID:
XP_062180008
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All DBs
Position
11:29032569..29042680
Genome browser
AA seq
1647 aa
AA seq
DB search
MAGGTVLSDEEEDDIEVDEEDPRPSRRGRNDMDDRDDDDEEDEEEDGQDEFEKDGFIVDD
EDEEEDEEGEEEEQKSDDERRKKKKKKKRESEDFTLDEDDYMLLQDNNITGISRPKPGNK
FKRLKKAGRESEMDERSGYSDDDGTGKKRTGKERVEYSLFGDHQDAPFEDILEEDQQAEE
VEVVEDEDDEMADFIVEDEIDENGQVVRKKKIKKKLPRQAAGVSSSALQEAHDIFGDVDD
LLALRKQDLEREAANSGDLRGNRLEDEFEPFILAEKYMTAKDEQIKEIDVPERMQLSEEL
TGYPSTDSTMIEEESIWIHNQLTGDGFLSFFGNEHVNKDIDQKDIANVLTMLHVNKFEIP
FIAMYRKENCPSLFKDLDSNEQGNENDVPKMRWHKLLWAVQTLDKKWLLLQKRKVALELY
YDKRFDDENRRIDDVTRQDLNRQLYNSIIEALKDAKSEKEVEDVDAKFNLHFPPGEVEEE
GQFKRPKRKSLYNICHKAGLWEVANQFGRSAEQLGHHLTLTKIPEAGELDSGKDSPEEVA
ANFMCAMFETPQDVLRGARHMAAVEIGCEPIVRKHIRSIFMNKAVVSTSPTPEGNTIIDP
YHQLSGVKWLREKPLNKFVDAQWLLIQKAEEEKLLKVNIKLPENAKKELMSEARENYLSD
CVSKSAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKNWLHMEYGKQLWNKVTVA
PWKKKDTDKKDADIDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVLYAGSISSRS
QGVAESQRKKNDQQRVLKFMTDHQPHVVCVGTSNYNCRQLKDDIYEVIFKIVEDHPRDVN
PQMENFSIVYGDESVPRLYENSRISSDQFPGQSGIVKRAVALGRYLQNPLAMIATLCGPG
KEILSWKLHALEQFLTPDEKYEVVEQVMVDATNQIGFDVNLAASHEWHFSTLQFVAGLGP
RKASALQKDLVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAASAQIIDLLEDTR
IHPESYVLAKNLAKDVYAEVAPHEANEMDDDEQEMAIEHVRERSDMLKRLDIDEYIKSIS
EEFRKKETLQDIQMELLCGFSDWRNPYTEPSPDEEFWMLSGETEDTISEGRIVQVTVRNI
QENKIICTFDSGLKAIVMADNYSDDGFDPESSQLHEGDVLTGKIRNVNKNRFMVYLTCKS
SEMRRRPYTRGDRDPYYHEQDMAPTEQDKARKQKEIAKKHFKPRMIVHPHFQNLTAEEAM
QFLSDKEPGEKVIRPSSRGPSFLTLTLKIFDDVYAHKEITEGGKDHKDITSLLRLGKTLT
IDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKNEVDEMLRVEKAENPMRIVYCF
GISHEHPGTFILSYVRSTNPHHEYVGLYPKGFRFRKRDFDNIDRLVSYFQKNIDKPPPDS
GPSMRNVAAMVPMKNSAWGSGSGVGGGNDGWRGDGNNDRGRPFSGRSGGRFDSRNSSGGR
GREHGRGRGNFGNDDNGGGWSGNGGGSSGGWTDNIGSGGGGWGTGGTGGSWGGGGSTGGG
SGGGDAGWGGAGGDSNRGSGGSGGGWGAAAGGADSAGGGGSGGWGAAAGGTDGAGGSNDS
GWGSAKKLVPAQDGGSRWGSSGAGGGW
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atggctgggggcacggtgctctccgatgaggaagaagatgatatcgaggtcgacgaggag
gatccgcggccgtcgcggaggggcaggaacgatatggacgatcgcgacgacgatgacgag
gaggacgaggaagaggatggccaggacgaatttgagaaggatggcttcatagtggatgat
gaagacgaggaggaagacgaggaaggagaggaagaggaacagaagagtgacgatgagagg
cgtaagaagaaaaagaaaaagaaaagggaatcagaagacttcacgcttgatgaggatgac
tacatgttgctccaggataataacatcactggcatcagtcggccaaagcctggaaacaag
tttaagcgcttgaagaaggctggaagggaatctgaaatggatgagcgctctggttactca
gacgatgatggaacagggaaaaagcgtactggcaaggagagggttgagtacagcttattt
ggtgaccatcaagatgcaccctttgaggacattcttgaggaggatcagcaggcagaggaa
gttgaggttgttgaagacgaagacgatgaaatggctgatttcattgttgaagacgaaatc
gatgagaatggccaagttgtaagaaagaagaagattaaaaagaagttaccacgacaagca
gcaggtgtatcgtcatctgctctgcaagaggcccatgacatatttggtgatgttgatgac
ttgttagcactaagaaagcaagatcttgagagggaagctgctaattccggtgacttgaga
gggaataggcttgaagacgagtttgagccatttattcttgcagagaagtatatgacagca
aaagatgagcaaataaaagaaattgatgtacctgagaggatgcagttgtctgaagaattg
actggctatccttcaacggatagcacgatgatagaggaagagagcatatggatacacaat
caactaactggtgatgggtttctttccttttttggcaatgagcatgtgaacaaggatatt
gaccagaaggacattgctaacgtcttgaccatgttacatgtcaacaaatttgaaattcca
ttcattgcaatgtatagaaaggagaattgcccaagcctgttcaaagaccttgattcaaat
gaacagggtaatgaaaatgatgtgcctaaaatgaggtggcataagctgctctgggcagtt
cagacgttagacaaaaaatggctgcttcttcagaagcgcaaggttgctttggagttgtat
tatgataaaagatttgatgatgagaatcggaggatagatgatgtcacaaggcaggaccta
aacaggcaactttataattctatcattgaagcactaaaggatgctaaatctgagaaagag
gtggaggatgttgatgcaaaattcaatttacattttcctcctggtgaagttgaagaagaa
ggccaatttaaacggccaaaaaggaaatccctgtacaatatttgtcacaaggcagggtta
tgggaggttgccaaccaatttggtcgcagtgctgagcaattaggtcaccatctgacatta
acaaagatacctgaagcaggtgagctggatagcggtaaagactctcctgaagaggttgct
gcaaatttcatgtgtgcaatgtttgaaacaccacaagatgttcttcggggcgcgagacac
atggcagcagttgagattggttgcgagcctattgtaagaaagcatattcgaagcatcttc
atgaataaagcagttgtgtcaacaagccccacaccagagggcaataccatcatagatcca
tatcatcaactatcaggtgttaagtggctgagagagaaaccactgaacaagtttgtagat
gcacagtggcttcttattcagaaagcagaggaagaaaagctcctcaaagttaacataaaa
ttgccagaaaatgcaaagaaagaactcatgtctgaggctcgtgagaattatctaagtgac
tgtgtgagcaagtctgcacaattgtgggatgagcaacgaaagatgatactggatgatgcc
ttcttcaatttccttcttccatcaatggaaaaggaagctcgatcgctgttgacagcaaaa
gccaaaaattggcttcatatggaatatgggaaacagttgtggaacaaggttactgttgct
ccttggaagaagaaggacacagataaaaaggatgctgacattgatctggatgatgaatcg
gagttgagagttatggcctgctgctggggtcctgggaagccagcaactacctttgtaatg
ttagactcatcaggagaattggttgatgttctatatgcgggttctatcagtagcaggtct
caaggagttgctgagtcgcagcggaagaagaatgaccagcagcgagttttaaagtttatg
actgatcatcagccacatgttgtgtgtgtgggaacatcaaactacaattgcagacaactc
aaggatgatatttatgaggttatttttaaaattgtagaagaccatccgagagatgtgaac
ccgcaaatggaaaattttagcattgtctatggtgatgagtctgtacctcgcttgtatgag
aactctcgaatatcttcagatcaatttcctggccagtcaggtattgtgaagcgggctgtg
gcacttggacgttaccttcagaatccattggcaatgattgcaacactgtgtggacctgga
aaagagatactttcgtggaaactgcatgcgcttgaacagtttcttactcctgatgaaaag
tatgaagttgttgagcaagtaatggttgatgcaacaaatcagataggttttgacgttaat
cttgctgctagccatgagtggcatttttcaactttgcaatttgttgctggtctgggtcca
cgcaaagcttcagctttgcagaaagatctggtaagagagggatccatttttagtcgtaag
gagcttgtaaaacctctaggcaggaaagtattcatgaatgcttctgggtttttacgtgtt
cgacggagtggtgcagctgctgccagtgctcaaatcattgatctgcttgaggatactagg
atccatcccgaatcatatgtattggcaaagaatttggccaaggatgtctatgctgaggtt
gcaccacatgaagcgaatgaaatggatgatgacgagcaagagatggcaattgagcatgta
agagaaaggtcagatatgctcaaacgtcttgacattgatgaatatataaagagtatttca
gaagaattccgtaagaaggaaacactgcaggacatacagatggaactgctgtgcgggttt
tctgattggaggaacccctataccgagccaagcccagatgaggaattctggatgctttct
ggtgaaactgaagataccatatctgaaggaaggattgttcaagtaactgttcgtaatata
caagagaataaaattatttgcacttttgattctggtttgaaagccatagttatggcagac
aattattctgatgatggctttgaccctgagtcatcacagttacatgaaggtgatgtgtta
accggcaaaattaggaatgttaataaaaataggttcatggtttatttaacatgcaagtct
agtgaaatgaggagaagaccatacaccagaggtgatcgggatccttactatcatgaacaa
gacatggcaccgactgaacaagataaggctcgaaaacaaaaggaaattgcaaagaaacat
ttcaagccccggatgattgttcatcctcactttcagaacctgacagcggaagaagccatg
cagtttttatcagataaagaacctggtgagaaggtcattcggccaagttctaggggacca
tcatttctgactcttaccctgaaaatttttgatgacgtctatgcacacaaggagataact
gaaggtggaaaggatcacaaagatatcacaagtttgcttcgcctgggaaaaacattgaca
attgataacgaaacttttgaagaccttgatgaggttatagacagatatgtggatccgttg
gtaggacacctgaagagcatgctctcttaccgtaaattcaggaaggggttaaaaaacgag
gttgatgaaatgttaagggtagagaaggcagagaatcctatgagaatagtatattgtttt
ggaatatctcatgaacatccaggcaccttcatattgtcatatgttaggagtacaaatcca
catcatgaatatgttgggttatacccgaagggcttcagatttcgaaagagagatttcgac
aacattgatcgcctcgtatcgtatttccagaagaatattgacaaaccaccgcctgattct
ggaccatcaatgcggaatgttgctgcaatggtgcctatgaaaaattcagcttggggttct
ggtagtggtgttggtggtggaaatgatggatggaggggagatggtaataatgataggggt
agacctttctctggaagatcaggagggaggtttgattcaaggaacagttctggtggtcgt
ggacgagagcatgggcgaggtcgaggtaactttggcaatgacgacaatggtggaggttgg
agtggtaatggtggtggcagcagtgggggatggactgataacattggcagtggtggaggc
ggatggggcacaggtggcactggtggctcctggggtggtggtggtagtactggcggagga
tctggaggcggggatgctggatggggtggagctggcggtgacagcaaccgtggtagtggt
ggcagtggaggaggctggggagcagctgctggtggcgctgacagtgccggtggtggtggt
agtggaggttggggagcagctgctggtggaactgacggtgctggtggctctaacgactct
ggttggggcagcgccaaaaagttggtcccagcacaggatggtggaagcaggtgggggtcc
tccggcgccggtggtggctggtga
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integrated database retrieval system
