Phragmites australis (common reed): 133884633
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Entry
133884633 CDS
T10575
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133884633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133884633
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133884633
mRNA degradation factors
5'-3' decay
Decapping complex
133884633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
133884633
NCBI-ProteinID:
XP_062180094
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Position
11:complement(29896881..29903165)
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AA seq
813 aa
AA seq
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MRGVRGVGGGASSSSSTAENSRFDAAQYSFFGKAPMEGSELGGVLEDGGVDGDGSGFSGL
DDGGYQFSSMGEEIDCMSNLSEIDDLASTFAKLNRTIIGTRNPGVIGDRRSISRESSLTT
DWVQDVDFPNWVDQDIPDSDELQDSKQWCSQMQSSPHFGESKPLSRTSSYPQPPLQHRLS
EPILVRSSSFTSYPPPGGGAGLPYPAKGLTRHSSIPPPGAVHQMGSPSSSLSGSPYHTTG
LPHGLPFGRSMSYTAADLSMSSILQNDWPNQTGPVAFEHLNLWPNLLQQQLSLPSSSMSS
MFFPQQQQRFLPVQQSFQNYMNLQPHLLYQHRSPDIMGKFDHVPNVPSPRDKRSRSGRGK
HSTRFSQQPSDTGSQNGDNGGVKFRSKYMSSEEIETILRMQHSAHHSSDPYNDDYYHQAC
KAKRSVNSQHKSSFSPMSIKDVPSKFRSGGDQHAYLQVDAVGRVSFSSIRRPRPLLEVDF
PASGDHKSSMRPLEKEPMLAARITVEDCLRLLLDVDDIDRFLQSSQPQDSSFQLRRRRQV
LLEGLAASLELVDPFGPNKPGHSSGLAPKDDLIFLRIVSLPKGRNLLARYLRLLVPGGEL
TRIVCMAIFRHLRSLFGGLPSDSGAAETTISLAKTVSSCVLHMELSALSACFAAVVCSSQ
QPPLRPLGSSAGDGASLIIKSVLDRATELLGDPHSAANYSRSTRSLWQASFDAFFGLLTK
YCDSKYESIVQRFAIQGSNSVVGPEASKAVSREMPVELLRASLPHTNEHQHQTLLDFARK
SMCVSGFNPDASHGHISSESVLGQHSKDPKVIA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtgtcaggggggttggcggcggcgcctcgtcctcgtcttccaccgcagagaac
tcgcgcttcgatgcggcgcagtactccttctttggcaaggcgcccatggagggatcggag
ctcggtggtgtgttggaggatggaggtgtcgacggcgatggcagcggatttagtggactt
gatgatgggggttaccagttttcatctatgggagaagagattgattgtatgagtaacttg
tctgaaattgatgatcttgcaagcacttttgcaaagttgaaccgtactattattggaaca
aggaatcctggtgttattggcgatagacgatcaatttcaagggaaagttctttgacaact
gactgggttcaagatgtggacttccccaattgggtagatcaggatataccagacagtgat
gaattacaggacagcaaacagtggtgttcacaaatgcagtcttcacctcactttggagag
tccaaaccactgtctcgaacatcttcgtatccccagccaccattacagcaccgcttaagt
gaacctattcttgtcagatcttcttcgtttacatcctatccaccaccaggtggtggtgct
gggttaccttatcctgctaaaggtcttacacgacactcaagcattccaccacctggtgct
gttcaccagatgggttctccaagttcgtcgctttctggttctccatatcacacgactggt
ctacctcatggactgccctttggacgaagcatgtcttacactgctgcagatctgtcaatg
agcagcatcctgcaaaatgactggccgaaccaaactggtccagttgcttttgagcatctt
aatctatggcccaatttgttgcagcaacaattatctctgcctagtagttcaatgtcttca
atgttttttcctcagcagcagcagagatttttgccagtccagcagtcctttcagaattac
atgaacttgcaacctcacctattatatcagcatcgttctccagatataatgggcaagttt
gatcatgttcctaacgtgccttcaccaagagacaagcgatctaggtcaggaagaggaaaa
cacagtacacgcttttctcaacagccttctgatacaggtagccagaatggtgacaatggg
ggggtaaagttcaggtccaagtatatgtcatccgaagaaattgaaactatcttaagaatg
cagcactcagcacatcacagcagtgatccttacaacgatgattactatcaccaagcttgt
aaagccaaaagatctgtcaattctcagcataagtccagtttctcccctatgtcaataaaa
gacgttccctcgaagttccggtctggtggtgatcaacatgcatatctacaggttgatgct
gttggaagagtttcattctcttccatacgtaggcctcgccctcttcttgaagttgatttt
cctgcatctggtgatcataagtcatctatgaggccactggagaaagagccaatgctggca
gccagaataactgttgaagattgtcttcgtcttcttctggatgtagatgatattgatcga
ttcttacagtctagccagccacaggacagcagtttccaactgaggcgaaggcgacaggtc
ctccttgaaggcttagctgcatcacttgagcttgttgacccttttggccccaacaaacct
ggccattcgtcaggattggcccctaaggatgaccttatctttcttcgcatcgtttctctc
cctaaaggacgtaaccttttggcacgctatcttcgacttcttgtccctggtggtgagctg
acccggatcgtctgcatggctatttttcgacaccttaggagcttgttcgggggtttgccg
tcagactctggtgctgcagaaacaaccattagtcttgccaagactgtttcctcttgtgtg
ctccatatggaactaagtgctctcagtgcttgtttcgccgctgttgtctgttcatcgcag
cagccacctctccgcccacttggtagctctgctggcgatggggcttctctaatcatcaaa
tctgtactggatagagcaactgagctactgggtgatcctcattctgcagccaactacagc
aggtcaacacgttctctgtggcaagcatcattcgatgctttctttggacttctgacaaag
tactgtgacagcaagtatgaaagtattgtgcagaggtttgccatccagggatccaactct
gtggtaggacctgaggcctccaaagcagtcagcagagagatgcctgttgagctgctacgt
gcaagtcttcctcatactaatgaacaccaacaccagacactgctagattttgcccggaaa
tctatgtgtgtatccggtttcaatcctgatgctagccatggacatatttcttccgaatct
gttctgggtcaacactcgaaagacccaaaggtcattgcttaa
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