Phragmites australis (common reed): 133885006
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Entry
133885006 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133885006
KO
K03093
RNA polymerase sigma-I factor
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133885006
Transcription machinery [BR:
paua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
133885006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
Motif
Other DBs
NCBI-GeneID:
133885006
NCBI-ProteinID:
XP_062180616
LinkDB
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Position
11:33932686..33935544
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AA seq
564 aa
AA seq
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MGLQVMHGRPCASRCSSSSSGVIQVQPLKQSHHPLSGRSLSSESLAVLALHLLLRRHKYH
NGDIVRTSASSSGVLQITENKSSSCTKEKVDAERKALDDALDRNKQLGSLNKEMSYWMDL
GCTNSNLQYSLLMQNLGELENSLAGKELAVLEKDIHVHIEQLGALKSFDASMSRATLDTL
THASHESDCSLFDKIIKFDPETPLKEEDTEVIIRSGKNQERKLKRIRASEKGSGISLNVS
KRKSRKSRTLSSSQFISEWKNYPGRRRSIAREQSALLVTIKECANLEKIRENMVKEGQEV
NYHRWAMAAGVDEAELKSRLQAGYCSRERLLVTTEWLVKYIARTYTGMGTAFDDLLQAGK
MGVLDGAEKFDSQKGCKFSTYIKYWIRKGMLALLAENSGVTLLPARMESIIRKVKEARRA
IRHSAGRNPSDSEIATMVGVSVANVRLARKCSRRVVSLYTDIGIGQNAKFAEVIPDTSME
APDEAIFRSQLRERLLLVLDRLPAREGHVLKLRHGLEDGKCMSLEQIGGVYRVSKEWIRK
IEKSAMAKLRNEDVRRELNDFCGF
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgcaggtgatgcatggcaggccctgcgcctcgcgctgctcctcgtcctcgtct
ggggtgattcaggtccagcccctgaagcagtctcaccatccattgagtggaaggtcactt
tcctctgaatcccttgctgtactggctttgcatctcttgctcagacgtcacaaataccat
aatggggacattgtgagaacttctgcatcttcatccggtgtgcttcaaatcacagagaac
aaatcaagtagctgtacaaaagaaaaggtggatgcagaaagaaaggccctggacgatgct
ctcgacagaaataagcagcttggcagtctaaataaagagatgtcctattggatggatttg
ggttgcacaaacagcaatttgcagtacagcttgttaatgcaaaaccttggcgagttggaa
aatagtttggctggtaaagagttagcagtgctggaaaaggatattcacgtacatatcgaa
caacttggagcattgaaatcgtttgatgcgtccatgtccagggccaccctagacacccta
acgcatgcctcacatgaatcggattgttctctatttgacaaaattattaagtttgatcct
gagactcctctgaaggaagaagacactgaggtgattatccgaagcggcaagaatcaagag
aggaaactgaaaagaataagggcatcagaaaaaggatctgggatctccttgaacgtgtct
aaacgaaaatcaagaaaatcacggacattgagcagtagtcaatttatatccgagtggaag
aattatccgggacggcgaaggagcattgcacgtgaacaatcagcattgttagtgactatc
aaggaatgcgcaaaccttgagaaaattagagagaacatggtaaaggaggggcaggaggtc
aactatcacaggtgggcaatggcagctggagttgatgaagcagagctgaagagcaggctg
caggcaggttactgcagccgagagaggttgctcgtgaccaccgagtggctagtcaagtac
attgcaagaacatacaccggaatgggtacggctttcgatgatctacttcaggctgggaaa
atgggagtccttgatggcgccgagaagttcgacagccagaaagggtgcaagttctccaca
tacatcaagtactggatcaggaaagggatgctagctctcctggctgagaattcaggagtg
accctgctgcctgcaagaatggaaagcatcattcgtaaagtgaaggaggcgcggcgcgca
atccggcacagcgcagggaggaatccatcggattcagagatcgccaccatggttggcgtg
tcggtagccaacgtcaggttggcgcggaagtgctctcggagagtggtgtcactctacaca
gatattggaattggtcagaatgcaaagttcgcggaggtgattccggacacatctatggag
gctccagacgaggccatcttccggagccagctgagggagaggctgctgctcgtgctggac
aggctcccggcacgggaaggccacgtactgaagctgcggcacggcctggaagacggcaag
tgcatgtcactggagcagatcggcggcgtgtaccgtgtgtccaaggagtggatcaggaag
atcgagaagtcggccatggcgaagctcaggaacgaggacgtgcgccgtgaactcaacgac
ttctgtgggttttag
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