Phragmites australis (common reed): 133885055
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Entry
133885055 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133885055
09122 Translation
03013 Nucleocytoplasmic transport
133885055
03015 mRNA surveillance pathway
133885055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133885055
03041 Spliceosome [BR:
paua03041
]
133885055
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133885055
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133885055
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133885055
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133885055
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
133885055
NCBI-ProteinID:
XP_062180672
LinkDB
All DBs
Position
11:34187114..34191741
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AA seq
431 aa
AA seq
DB search
MMGEADAKDNDVYEEELLDYEEDDDKAVDGSAAKPTGEVANKGYVGIHSSGFRDFLLKPE
LLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVA
ALVLCHTRELAYQICNEFERFSKYLPELKVAVFYGGVHIRKHKDLLKNECPHIVVGTPGR
ILALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI
RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVK
SVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIER
VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELP
EQIDTSTYMPS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccgatgccaaggacaacgacgtctacgaggaggagctcctggactac
gaggaggacgatgacaaggccgtcgatggctccgccgccaagcccaccggagaggtcgcc
aacaagggctacgtcgggatccacagttccgggttcagagacttcctgctcaagccagag
ctgcttcgtgctatccaggactgcggttttgagcatccttccgaagtgcaacacgagtgc
atccctcaagcaattctcggaatggatgtcatctgtcaagccaaatctgggatggggaag
actgctgttttcgtcctttcatccctccagcaaattgaccctgttgctggtcaggtcgca
gcgcttgtattgtgccacacaagggaactggcttaccagatatgcaatgagtttgagagg
ttcagcaaatatctccccgaattaaaggttgctgtcttctacggaggtgttcacatcaga
aagcataaagatttgttgaagaatgaatgccctcacattgtggttggcactcctggaagg
atacttgctcttgccagagagaaggatctctccttgaagaatgtgaggcatttcatcctc
gatgaatgtgataagatgcttgagtcacttgacatgcggagagatgtccaggagatcttc
aaaatgacacctcatgataagcaggtcatgatgttttcagcaacactcagcaaggagatc
cgtcctgtatgcaagaaatttatgcaagatccgatggaaatttatgttgatgatgaggca
aagttgaccctccatggccttgtacagcactacataaaactgagcgaggcggagaagaac
cggaaattgaatgatctcttagatgctcttgattttaaccaagttgtgatatttgtcaag
agtgttagcagagctgcagaactgaataagttgctttgtgagtgcaacttcccttcaatc
tgtatccattctggaatgacccaggaagaaaggttaacccgatacaagaacttcaaggaa
ggccacaagagaattcttgtggctacagatttagtcggcaggggcattgatattgagcgt
gtcaacattgtgataaactatgacatgccagactcagctgatacatatttgcacagggtt
ggtagggctgggcgttttggcacgaagggacttgctattaccttcgtttcctcggcttca
gattctgatgtccttaaccaagtgcaagaaaggttcgaggtcgacataaaggagctgccg
gagcaaattgacacttccacatacatgccatcgtaa
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