Phragmites australis (common reed): 133885357
Help
Entry
133885357 CDS
T10575
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
133885357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133885357
03036 Chromosome and associated proteins [BR:
paua03036
]
133885357
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133885357
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133885357
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
133885357
Noncanonical PRC1 (PRC1.1)
133885357
Noncanonical PRC1 (PRC1.3/1.5)
133885357
Noncanonical PRC1 (PRC1.6)
133885357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-RING_4
zf-C3HC4_4
zf-UDP
zf-rbx1
P16-Arc
zf-RING_6
zf-Nse
TRAF3_RING
zf-RING_11
zf-RING_10
zf-C3HC4_5
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
133885357
NCBI-ProteinID:
XP_062181047
LinkDB
All DBs
Position
11:29274359..29284309
Genome browser
AA seq
489 aa
AA seq
DB search
MPAQKRPLSSSASPGPDGHVEEAPGADADSGGGRSPKPLLNEASAAAEELEGGPRQAKGR
RDDSDADEEEEEGDGEGEGGGGGDEDCDSQLSQSDGEMDEFILVKLTDIRKEVQCPICLG
IIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALILALYPD
VDKYEEEELAFSEEERTRNKKIQESIAETFRRQTEALVKKRSAAKAIELASRKAQGNMRS
RRRRRTSSPDAVPTDFDDEDREENGNDGSKESSSVDDRSPDVRHKRARRWPVPRRSPAKS
IGSTDNSIEDNDDLGGARDILTTSPLRGEMLAWGKNGVRSQTRHGNASGSSGRMAKGGRV
AKLVDHLRNADEFDTKFNLYLALLPLDGQSVPKLEKPYLNCQPTLSVQHLCQFVALQLSR
QPKEVEIYIRKNSMDECLATDNTSTDETKPDQSNGLERLWEEKSLSELYPLLATGQGDLE
LLYSLKAQG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcagaagcgcccgctctcgtcgtccgcctctcccggccccgacggccacgtc
gaggaagctcctggcgccgacgcagacagcggcggcgggcggtccccgaagccgctgctg
aacgaagcctccgccgcggcggaggagctggagggcgggccgcggcaggcaaagggccgg
cgcgacgattccgatgctgacgaggaggaggaggaaggcgacggcgaaggcgaaggaggc
ggcgggggcgacgaggactgcgacagccagttgtcgcagagcgatggcgagatggacgag
tttatacttgtgaaattaacagatattcggaaggaagtgcagtgccctatatgcttaggc
attattcggaagacaaggacggttatggagtgtttgcaccggttttgcagggattgcatt
gataaatccatgcggcttggaaataatgaatgcccagcatgccgcactcattgtgcaagt
agacgttccctgagggatgatcctaattatgacgctttaattttggcattatatccagat
gttgataagtatgaggaagaggagcttgctttcagtgaagaggaaaggactcgcaacaaa
aagattcaagaatccattgctgagacatttcggagacaaacggaagcacttgtgaagaag
cgttccgctgcaaaagcaatagagttagcttcaagaaaggctcaggggaatatgcggtca
aggaggagaaggcgaactagttctccggatgctgtcccaactgattttgatgatgaggat
agagaagaaaatggcaatgatggaagcaaagagtcatcttctgttgatgatcgttcccca
gatgtaaggcacaaaagagctcggaggtggcctgtgccacggcgttcccctgctaagagc
atcggcagtactgataatagcattgaggataatgacgacttaggaggtgctagagatatc
ttgactacttcgccattgcggggagagatgcttgcatgggggaaaaatggcgtccgcagt
caaactcgacatggcaatgccagtggctccagtggaaggatggccaagggtggacgtgtt
gccaagttggtggaccacctccgtaatgctgatgaatttgatactaagttcaacttgtat
cttgctctgcttccacttgatggacaaagtgtgcctaaattggaaaagccctatctcaat
tgtcagccaacattatctgtccagcatctctgtcagtttgtcgctcttcagttgtctcgg
caacccaaagaagtcgagatatacatcaggaaaaactccatggatgaatgtttggcgacc
gataacaccagtacagatgagacaaagccggatcaatctaatggcttagaaagattgtgg
gaagagaaatctctttcagagctgtaccctttgcttgccaccggtcaaggggatctggaa
ttgttatactctctgaaggcacaagggtag
DBGET
integrated database retrieval system
