Phragmites australis (common reed): 133885470
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Entry
133885470 CDS
T10575
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133885470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133885470
04121 Ubiquitin system [BR:
paua04121
]
133885470
03036 Chromosome and associated proteins [BR:
paua03036
]
133885470
03400 DNA repair and recombination proteins [BR:
paua03400
]
133885470
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133885470
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133885470
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133885470
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133885470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_5
zf-RING_6
zf-HC5HC2H_2
zf-RING_10
PTCB-BRCT
PHD_NSD
zf-rbx1
STPRs
Motif
Other DBs
NCBI-GeneID:
133885470
NCBI-ProteinID:
XP_062181173
LinkDB
All DBs
Position
11:29841959..29846971
Genome browser
AA seq
972 aa
AA seq
DB search
MADVGSLEKMGRELKCPICLSLLSSAVSITCNHIFCNGCLTESMKSASSCPVCKVPYRRR
EIRPAPHMDNLVAVFKSMEAAAGTSVMSTQVAPAPKVADGSECGNSGCKTKRLQKKVASK
KEKNTTKATAASASCPTTKPSFPTSKRIHVTPFPESETPMKPKKIMKPEEPKNKLNGDVG
EDKDKTLTSDKPGSPSLSPFFWLREGGEEGGTAETLSEPLSLDTPLRHNAPAFSDIKDSD
NEIPNNTTPNSKAKVTEVFDSEIFEWSQRPCSPELCSTPLKKQGKFKNILDQITEKDDGG
DMHHGGSFDKLDHANNAAQPQPVNAEDIKQKRKKARARNINNSKLPNHGKLCTKGSDVDQ
QGTNIPISIAAKPHQKNSSTKERNPWSGRNKVSRNSKRILCAIDKSIEAFGPQENGLEVE
APENQLSERSLKKDKNTRQKKSGRKLEIAGESTVKAAENKPEQRSKRIKRMSDDAVAEKI
RVLSETENETEMLQLHNLIKGCTQHKPLDGRSKQTMESNISRNTQNILLGRCQSKTAIHT
VPSIENVSFKNGGAKGIEQSDYSGSIRLCTAHNAVLKKCEDKVSKVSCAFCQSDDITEES
GEMVHYHNGKQVPAEFNGGANVIHSHKNCLEWAPDVYFEDETVFNLTTELARSRRIKCAC
CGIKGAALGCFEMSCRKSFHFTCAKLIPQCRWDNENFVVLCPLHQSSKLPIETSELKKES
KRKLTPKGSFQVRPRQDYGNKWTWPSGSPQKWILCCSALSAAEKGTVSEFAKIAGVSIST
SWSPTVTHVIASTDQSGACKRTLKFLMAILNGKWIVSIDWVKTCMECMEPVDEQRFEVTV
DVHGTSEGPMLGRQRVIHKEPKLFDGIQFYLHGDYTKSYRGYLQDLVVAAGGTVLQRKPV
SRDQQKLLDDSSLILILYSVENQDMAKSKSKDGINTGRSQADAQALACASGGKVVSSAWI
IDSIAACSLQPL
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtcggcagcctcgagaagatgggtcgggagctcaagtgtcccatctgcttg
agcctgctgagttcggcagtatccatcacctgcaaccacatcttctgcaatggttgtctg
acggagtcgatgaaatccgcctccagctgcccagtgtgcaaggtcccgtaccgccgaaga
gaaatacggccagcacctcacatggacaatttggtggccgttttcaaaagcatggaggcc
gcagcaggtactagtgttatgtcaacacaggtggctcctgcacccaaagttgcagatgga
tcagaatgtggtaacagtggctgcaagactaaacggttgcagaagaaggtagcatccaag
aaggaaaagaatacaaccaaggctactgcagcttctgcatcttgtcccactacaaagcca
tctttccctacgagcaaaagaatacacgtgacaccattccctgaatctgagacaccaatg
aagcctaaaaagattatgaagcccgaagagccaaaaaataagctgaatggtgatgttgga
gaggataaagataaaacattgacttctgataaaccaggaagcccttcattgtcacctttt
ttttggctaagggaaggaggagaagaaggtggcactgctgaaactttaagtgaaccacta
tcattagacacacccttgcgtcacaatgcacctgcttttagtgatatcaaagattctgat
aatgaaatccccaataatacgactcctaatagcaaagctaaggttacagaagtcttcgat
agtgaaatctttgaatggagtcaaagaccttgctcccctgagctgtgttctactccattg
aaaaagcagggcaaatttaagaatatactagatcaaatcacagagaaggatgatggtggc
gatatgcatcatggtggttcatttgataagttagatcatgcaaataatgcagctcagcct
cagcctgtcaatgctgaagatattaagcagaagagaaagaaggcaagagctaggaacata
aacaattcaaaactgcccaatcatggtaagctatgtacaaaaggttctgatgttgatcaa
caaggtacaaatatccctataagtatcgctgcaaagccacaccagaagaacagcagtaca
aaagagagaaacccatggagtggaagaaacaaggtctctaggaacagcaaaagaattctt
tgtgctattgataaatctatagaggcatttggccctcaagaaaatggtttggaggttgaa
gcacctgagaaccagctttcagaaaggtccctaaaaaaggataaaaacactcgacaaaag
aaaagtggacgaaaacttgaaatagcaggggagagtacagtgaaggctgcagagaataaa
ccagaacaaagaagtaagcgaatcaaaagaatgtctgatgatgctgtagctgaaaagata
agagttctttcagagactgaaaatgaaacagaaatgctgcagcttcacaaccttataaaa
ggctgcacccaacataaacccttggatggtagaagcaaacagaccatggaatcaaacatt
agtcgaaatacacagaacattttacttgggagatgccaaagtaaaacggcaatacacaca
gttccttcaatagagaatgtctcatttaaaaacggtggtgcaaaaggtattgaacaatca
gattactcaggatcgatcagattgtgcactgcacataatgcagtcctgaagaaatgtgag
gacaaagtttccaaggtttcctgtgctttctgccagtctgatgatatcacagaggaatct
ggagagatggttcactaccataacggaaaacaagtgcctgcagaatttaatggaggggct
aatgttatacattcgcacaagaactgcctggagtgggctcctgatgtctactttgaagat
gagactgtctttaatcttacaactgagttggctcgaagtagaaggatcaaatgtgcttgc
tgtggaattaaaggtgctgcacttggatgctttgagatgagttgtcgaaaaagcttccac
ttcacctgtgctaagttgatcccacaatgtagatgggataatgaaaactttgtggtgcta
tgccctttgcaccaatcttcaaagttgcccatagaaacttctgagttgaaaaaggagtct
aaaaggaaactaacaccaaaagggtcatttcaagtaagacctcgtcaagattatggtaac
aaatggacatggccatctggatcaccacagaagtggattctttgctgttcagccctttct
gctgctgaaaagggtactgtatcagaattcgcaaaaatagctggtgtgtctatttcaaca
agttggagtcccactgttacccatgttattgcatcaactgaccagtctggtgcttgcaag
cgcacactgaagtttctgatggcaatcttgaatggcaaatggatcgtctccatagactgg
gttaaaacttgcatggaatgtatggaacctgttgacgaacagagatttgaagtgaccgtt
gatgtacatgggactagtgagggtcccatgttgggaagacaaagagtaatccacaaggaa
cctaaattatttgacggcattcagttctacctccatggagattacacaaagtcctacagg
ggctacctgcaagacctagtggttgcagccggtggaactgttctgcaaaggaagcctgtg
tcaagagaccaacaaaagttgctggatgacagctccctcatcctcatcctctacagcgtc
gagaatcaagacatggcaaaatcaaaatccaaggacggcatcaacactggtcgtagccaa
gccgatgctcaggctctggcctgtgcctctggtggcaaagtggtgagcagcgcatggatc
atcgactcaattgcagcttgcagcctgcaacctctctga
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