Phragmites australis (common reed): 133885621
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Entry
133885621 CDS
T10575
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit beta''-like
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133885621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133885621
03400 DNA repair and recombination proteins [BR:
paua03400
]
133885621
Enzymes [BR:
paua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133885621
Transcription machinery [BR:
paua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
133885621
DNA repair and recombination proteins [BR:
paua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
133885621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
CCDC39
OmpH
Motif
Other DBs
NCBI-GeneID:
133885621
NCBI-ProteinID:
XP_062181336
LinkDB
All DBs
Position
11:19458826..19462914
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AA seq
770 aa
AA seq
DB search
MAERANLVFHNKEIEGTAMKXLISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIE
DLLTIPSKGWLVQDAEQQSFLLEKHYYYGAVHAVEKLRQSIEIWYATSEYLKQEMNSNFR
ITDPSNPVYLMSFSGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYII
SCYGARKGVVDTVVRTADAGYLTRRFVEVVQHIIVRRRDCGTIXGISVSPQNGMTEKLFV
QTLIGRVLADDIYMGSRCIAARNQDIGIGLVTRFITAFRAQPFQAQPIYIRTPFTCRSTS
WICQLCYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFIGGTADLVRSL
SNGKIQFKEDLVHPTRTHHGQPAFLCYIDLHVTIQSQDILHSVNIPSQDILHSVNIPLKS
LILVQNNQYVESEQVIAEIRVGMSTLHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGN
LRRLPKTSHLWILSVSMSRSSIASFSLHKDQDQMNTYSFSVDGRYIFDLSMPNDQVIHRL
LDTFGKKDREILDYLTPDRIVSNSHWNFIYPSILQDNSDLLAKKRRNRFVIPLQYHQEQE
KELISCLGISIEIPFMGVLRRNTIFAYFDDSRYRKDKXGSGIVKFRYRTLEEEYRTREEE
YRTREEDSENEYETLEEEYRTLEDEYETLEDEYGILEDEYRTLEKDSEEEYGSPENEYKT
LEDEYGTLEEDSEEEYGSPEDGSENEYGTLEEDSEEDSEDEYGSPEEDSI
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacgggccaacctggtctttcataataaagagatagaaggaactgctatgaaa
tgacttattagcagattaatagatcatttcggaatgggatatacatcccatatactggat
caaataaagactctgggcttccatcaagccactactacatcgatttctttaggaatcgag
gatcttttaacaataccctctaaaggatggttagtccaagacgcggaacaacagagtttt
cttttggagaaacactattattatggggctgtacacgcggtagaaaaattacgccaatcc
attgagatatggtatgctacaagtgaatatttgaaacaagaaatgaattcgaattttcgg
ataacggatccttctaatccagtctatctaatgtctttttcaggagccagaggaaatgca
tctcaggtacaccaattagtaggtatgagagggttaatggcagatcctcaaggacaaatg
attgatttacctattcaaagcaatttacgtgagggactttctttgacagaatatataatt
tcctgctacggagcccgcaaaggggttgtagatactgttgtacgaacagcagatgctgga
tatcttacacgtagatttgttgaagtagttcaacatattattgtgcgtagaagagattgt
ggtactatctgaggtatttctgtgagtcctcaaaatgggatgacggaaaaactttttgtc
caaacactaattggtcgtgtattagcagacgatatatatatgggttcacgatgcattgct
gctcgaaatcaagatattggaattggattagtcactcgattcataactgcctttcgagca
caaccgtttcaagcacaaccaatatatattagaaccccctttacttgccggagcacatct
tggatctgtcaattatgttatgggcggagtcccactcatggcggtctggtcgaattgggg
gaagctgtaggtattattgcgggtcaatcaattggggagccagggactcaactaacatta
agaacttttcatacaggtggagtattcatagggggtactgccgaccttgtacgatccctc
tcgaatggaaaaatccaattcaaagaagatttggttcaccccacacgtacccatcatggg
cagcctgcttttctatgctatatagacttgcatgtaactattcagagtcaggatattcta
catagtgtgaatattccgagtcaggatattctacatagtgtgaatattccgttaaaaagc
ttgattctagtgcaaaataatcaatatgtagaatccgaacaagtaattgcggaaattcgt
gttggaatgtccactttgcattttaaagaaaaggtacaaaagcatatttattccgaatca
gacggggaaatgcactggagtactgatgtttaccatgcgcccgaatatcaatatggtaat
cttcgtcgattaccaaaaacaagccatttatggatattgtcagtaagtatgtccagatct
agtatagcatctttttcgctccacaaggatcaagatcaaatgaatacttattctttttct
gttgacggaagatatatctttgacctctcaatgcctaatgatcaagtaatccatagactg
ttggatacttttggtaaaaaagatagggaaattcttgattatttaacgccagatcgaatc
gtgtccaacagtcattggaattttatctatccttctattcttcaagataattcggatttg
ttggcgaaaaagcgaagaaatagattcgtcattccattacaatatcatcaagaacaagag
aaagagctaatatcctgtttggggatttcgattgaaataccctttatgggtgttttacgt
agaaatactatttttgcttattttgacgattcacgatacagaaaagataaanggggttca
ggaattgttaaatttagatataggaccttagaggaagaatatcggacccgagaggaagag
tataggactcgagaggaagactcagagaacgaatatgaaaccctagaagaggaatatagg
actctagaggacgaatatgaaaccctagaagacgaatatgggatcctagaagacgaatat
aggactctagagaaagactcagaggaagaatacgggagcccagagaacgaatataagacc
ctagaggacgaatatggaactctagaggaagactcagaagaagaatatgggagccctgaa
gatggctcagagaacgaatatgggactttagaagaagactcagaggaagactcagaggat
gaatatgggagcccagaggaagattctatctga
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