Phragmites australis (common reed): 133886573
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Entry
133886573 CDS
T10575
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3 isoform X1
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
paua01009
]
133886573
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133886573
Enzymes [BR:
paua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
133886573
Protein phosphatases and associated proteins [BR:
paua01009
]
HAD phosphatases
Fcp/Scp phosphatases
133886573
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
133886573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
133886573
NCBI-ProteinID:
XP_062182226
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Position
12:22286105..22291896
Genome browser
AA seq
1239 aa
AA seq
DB search
MRVTVTPKDEERLVGLMAKERPRSAVVAAGGDLVTAGSGGGEGSDGDSSASLEEISADDF
KESSAGGAALGAGAAAAAAAAPISRAWMGPPAMGYMSRSYAPAFHSFAWAQAVQKKPLVP
RPAADEDEVEHAIDASDEEMEEGEIEEGSASPPHAQPDTIDLDSDAPEKSESVAAEGSGN
AAPAAGAEEEEVDFDQVVGSILEELEMVSIEEAEKSFEGACARLRTCFESLKPLFPENGS
PMLMLEPLIQQAFVGIDTLTTVAKSYNLPRREQNMTMLLKILFHIKNRYSDMLTPDQRDE
LDTRVRQLVFEEKNNVDDPSANCSTKAMNVSAPSGQVSSGRLPFESETANPFSGSNLPRL
EIPAKKISPLLDLHADYDENSLPSPTRDNAPSFPVPRPVGFGAFPMALEKLSFPVRVEPA
KNSLYPSLNDPLKAVSSYQQKYGQNSAFPSDDLPSPTPSGDEGKSADKGGDIFGEVSSFS
IPKKTTLPSTSQMPASRPSTVSSSNDSYTGGPPGYAKQFEQSAAGPNHGLKGASKSRDPR
LRFLNRDSAGTADTNRRANFAEPKDGNLGGSVSINNRKHKAVDEPKVDENMLKRLRSGTG
NPRDMLVPTGNPNPNLRTGNQLINNISATTNSSGTTTNILQPPQTTAPQISAAPAVSLPA
VLKDIAVNPAMIMHWIQMEQQKMSASEPQLKVAAPGVMSSGMTSIVTAAMVLPPGNAPKT
TEVAQIPSVRPQVPVQTPPLNPQNDAAGVIRMKPRDPRRILHNNHAQKNDTVGSEQVKTN
GATQSDSQSSKDHLTNHEQHPEQHQTSSLPSQPALLSNITRPFTINSKLVDPVSNSQLAA
TSLMAPTQQTSSSNRADPRLSVGQNGPNADAATNAAPAPALEAVQPVDPWGDVDHLLDGY
DDQQKALIQKERARRIMEQQNLFSARKLCLVLDLDHTLLNSAKFIEVDPIHEEILRKKEE
QDRSLPERHLYRFQHMGMWTKLRPGIWNFLEKASKLFELHLYTMGNKLYATEMAKVLDPT
RKLFAGRVISRGDDSDPLDSDDRVKSKDLDGVLGMESAVVIIDDSIRVWPHNKHNLIVVE
RYTYFPCSRRQFGLPGPSLLEIDRDERPEDGTLASSLAVIERIHQKFFSHPNLSEADVRS
ILASEQQSILAGCRIVFSRIFPVGEANPHLHPLWQTAEQFGAVCTNQIDDRATHVVANSL
GTDKVNWALSTGRFVVHPGWVEASALLYRRANELDFAVK
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgacggtcacgcccaaggacgaggagaggctggtcgggttgatggcgaaggag
cggccgcggtcggcggtggtggcggcgggcggggaccttgttaccgccggcagcggcggc
ggggaggggtcggatggggattcgtcggcgtcgctggaggagatcagcgccgacgacttc
aaggagtcgtctgccggtggcgccgcgttgggggccggtgcagcggcggcggcggcggcg
gcgccgatatctagggcttggatggggccgcccgcgatggggtacatgtcgcggagctac
gcgccggcgttccacagcttcgcgtgggcgcaggccgtgcagaagaagccgctcgtgccg
cgcccggccgccgacgaggacgaggtggagcacgccattgacgcctcggacgaggagatg
gaggagggtgagattgaggagggctccgcttcacctccgcacgcgcagcccgataccatc
gacttggactcggacgcgccggagaagtcggagtcggtggctgcggaggggagtggcaat
gctgcccctgccgctggagccgaggaggaggaagtggactttgaccaggtcgtgggaagt
atactggaggagctcgagatggtctccattgaggaagctgagaagtcgtttgagggcgcc
tgcgcgcgtctgcgcacttgctttgagagtctgaagccgctgttcccggagaacgggagc
ccgatgctcatgctcgaacctctcatacaacaggcgtttgtcggaattgacaccctcacc
actgtggcaaaatcgtataatttgccgaggagggagcagaacatgaccatgctcttgaag
atattgttccacataaagaaccgatattcagacatgctgacacctgaccagcgagatgag
ctggacacccgtgtgaggcagttagtttttgaggaaaaaaacaatgtcgatgacccaagt
gcaaattgtagcacgaaagcaatgaatgtttcggctccatctgggcaggtttcatctggg
agactaccatttgaatcagaaacagcaaatccatttagtggctctaacttgccgaggttg
gaaatacctgcaaaaaagattagtcccttgttggatcttcatgcagattatgatgagaac
agcttgccttcgcccacccgggataatgcaccatcttttcctgtgccaaggcctgttggg
tttggagcatttccaatggcacttgagaaactatctttcccagtaagagttgagcctgca
aagaattccttgtatccatccttaaatgatcctctgaaggctgtttcctcttaccagcag
aagtacgggcagaattcggcctttccaagtgatgatctaccaagtccaactccttctggc
gatgagggtaaatctgcagacaaaggtggtgacatatttggtgaggtttccagcttctca
attccaaagaagactacactgccaagtacaagtcagatgcctgcttctcgacctagcaca
gttagcagcagcaatgatagttatacaggtggtccacctggttatgctaaacaatttgaa
cagtcagctgcaggaccaaatcatggactaaagggtgcatctaaaagtagggacccaagg
cttaggtttttgaaccgtgattctgctggtactgcagatacgaatcggcgtgcaaatttt
gcagaaccaaaggatgggaacttgggtggttcagtatcaattaataaccgtaaacacaag
gcagttgatgaacctaaggtggatgaaaacatgttaaaaaggcttaggagtggtactggg
aacccaagagacatgctagtgccaacagggaatcctaatcctaatcttagaacaggtaat
cagcttattaacaacataagtgccaccacaaatagtagcggaacaactaccaacattttg
cagccccctcaaactactgctccacaaattagtgcagctcctgctgtttctttgcctgct
gttttaaaggacatagctgttaacccagcaatgatcatgcattggattcaaatggaacag
cagaagatgtcagcatcagaacctcagctgaaggtagctgctccgggtgtcatgtctagt
ggtatgaccagtattgtaactgcagcaatggttttaccgcctggcaatgctccaaagacc
accgaagttgcacaaattccatctgttaggccacaagttccagtgcagacacctcctttg
aacccacaaaacgatgctgctggagtaatacgaatgaagccccgtgatccccgacgtatc
ctacataataaccatgcacagaagaatgatacagtgggctcggagcaagtcaaaactaat
ggagctacccagtcagactctcagagcagcaaagatcatttgaccaaccatgaacaacat
ccagagcaacatcagactagttcattgccttctcaaccagctttgctgtcaaacattaca
cgaccattcaccattaactcaaaacttgttgatcctgtctcaaattcacagttagctgct
acatcacttatggctcctacacagcaaacatcaagcagcaatagggcagatccaagacta
tctgttggacagaatggtccaaatgccgatgcagcaacaaacgctgctcctgcaccagca
cttgaagctgtgcagccagttgatccatggggtgatgttgaccatctccttgatggttat
gatgaccagcagaaggctctcatacagaaggaaagggcaagacggatcatggaacagcag
aatttgttttcagcgcggaaactatgcttagtccttgatttggatcacacactcctcaat
tctgcaaagtttatagaagtggaccctattcatgaagagattttgcgaaagaaagaggaa
caagacaggtctttgccagaacgtcatctgtatcggttccagcatatgggaatgtggacc
aagctgagaccaggaatatggaacttccttgagaaggcgagtaagctttttgagttgcat
ttgtacacaatggggaataagctgtatgctactgagatggccaaggttctcgatcctact
aggaaattatttgcagggcgagtcatctcaagaggtgatgacagcgatcctttagacagc
gatgatcgagtcaaaagtaaagatcttgatggggtattggggatggaatctgcagtagtg
atcatagatgactctataagagtctggcctcacaacaagcacaatttgatagttgtagag
agatacacttatttcccctgcagcagacgtcaatttggccttcctggaccatcacttctc
gaaattgatcgagatgagaggccagaggatggcacacttgcttcttcactggcggttatt
gagcgaattcaccaaaaattcttctctcatcctaacctaagtgaggctgatgtgcggagc
atactagcatctgagcagcagagcatccttgcgggctgtcgtattgtctttagccgcatt
ttcccggttggagaggccaacccccacttgcatcctctatggcagactgcagagcagttt
ggtgcagtgtgcacaaaccagattgacgatcgggctactcatgttgttgccaactccctt
gggacggacaaggtgaactgggcactatccacaggcagattcgtggttcatccaggatgg
gtggaggcttcagcgctcttgtaccgacgcgccaacgagcttgactttgcagtcaaataa
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