Phragmites australis (common reed): 133886652
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Entry
133886652 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paua03009
]
133886652
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133886652
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133886652
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SWI2_SNF2
RNA_pol_Rpc4
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133886652
NCBI-ProteinID:
XP_062182420
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Position
1:5303700..5307378
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AA seq
644 aa
AA seq
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MATTTPAAVAARKRALTEKRFSELSPALSPEIVEALDSSGFRRCTPVQAATIPQLLSHKD
VAVDAATGSGKTLAFVVPVVEILRRLSSPPKPHEVLAIIISPTRELSSQIYNVAQPFFAT
LKGVSSMLLVGGLDIKAELKKVEEEGANILVGTPGKLHDVMDRMDILEFKNLEILILDEA
DRLLDMGFQNQITSIISKLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVKTEAKPMS
KDDGQQELGPSKTPLGLRLEYMICEASKKSSQLVDFLVQNSGKKIMVYFATCACVDYWAV
ILPHLNSLKGYSIIPYHGKMKQGPREKALASFCALSSGILVCTDVAARGLDIPHVDLIVQ
YDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKLRSVPLTERECPTNAEDV
VPQIRSSALEDRNVMEKGLRAFVSFVRAYKEHHCSYIFRWKDLEIGKLAMEYGLLQIPSM
PEVKHHSLSLEGFIPINDVDVTQIKYKDKAREKQRKKALKRKAEEEAQNPKPEKKKAREK
AEKPKRKKTGKQRQSVQTKEDLDELAHEYRLLKKLKRGDIDEDEYEKLTGFGDSDGEASG
GDAGDLDERREKGNRVQKKLKQRGKGRGGPRKFEGKSKMRSNRR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaccacgccggcggcggtggccgcgcggaagcgcgcgctgacggagaagcgg
ttctcggagctgtctcccgcgctttccccggagatagtggaggcactggacagcagcgga
ttccggcggtgcacgcccgtgcaggcggcgaccatcccgcagctgctgtcgcacaaggac
gtcgccgtcgacgccgccaccggctccgggaagaccctcgccttcgttgttcccgtcgtc
gaaatcctccgccgcctctcctccccgcccaagccccacgaggttcttgccatcatcatc
tctcccacaagagaattgtcctcgcagatatacaatgtggcgcagccctttttcgcgacg
ctgaagggcgtgtcgtccatgctccttgttggtgggctggacatcaaggcagagctcaag
aaagtggaggaagagggcgcaaacatactggtgggtactcccgggaagctgcatgatgta
atggaccgcatggacattctggagtttaagaatcttgagattttgatcctggatgaggct
gataggctcttggatatgggattccagaatcagattacctcgataatttcgaaattgccg
aagctgaggaggactgggcttttctcagctacccagacggaggccgtggaggagctttcc
aaagccgggttgaggaatcctgtgagggttgaggttaagacagaggcaaagccgatgagt
aaagatgatggtcagcaagagcttggtccatccaaaacaccactggggcttcgattggag
tatatgatatgtgaagcatcaaagaagtcatcacagcttgttgatttccttgtgcaaaat
agtgggaagaaaataatggtatattttgcaacatgtgcttgtgtagattactgggctgtc
attcttccacatctgaactcgcttaaaggttattcaataattccttaccacgggaagatg
aaacagggccctcgagagaaagctttggcatcattttgtgctctttcaagtggtattcta
gtctgcactgatgttgcagcaaggggtcttgacataccacatgttgatctaattgtgcag
tatgatccacctcaagatcccaacgttttcatacatagagctggccgtaccgcacgttat
gatcaagaaggagatgctattgtgtttctcttaccaaaggaggatacttacgttgagttt
ttaaagcttcgaagtgtacctctcacagaaagggagtgtcccacaaatgctgaagatgtt
gtaccacagattagaagttctgcactcgaagatcgtaatgtaatggagaaaggacttaga
gcgtttgtttcatttgttcgagcatacaaggagcatcactgctcttacattttcagatgg
aaagaccttgagattgggaagttagctatggagtatggtttactccagatcccatccatg
ccagaagtgaagcatcattctctttcactagagggatttattcctattaacgatgttgat
gttacacaaatcaagtacaaggacaaagctcgagagaaacaacgcaaaaaggcactgaaa
aggaaagcagaagaggaagcccagaatccaaagccagagaagaagaaagctcgggagaaa
gccgagaaaccaaagcgcaagaagacaggtaagcagcgccagtcagtccaaaccaaggag
gacttggatgagctggcacacgagtaccgccttttgaagaagctgaagcgtggagacatc
gatgaagacgagtacgagaagctcaccggattcggagactctgatggtgaagcttctggt
ggggatgcgggtgacttggacgagagaagggagaagggcaacagggtgcaaaagaaactc
aagcagagaggaaagggcagaggagggcctaggaagtttgaagggaagagtaaaatgagg
agcaacaggagatag
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