Phragmites australis (common reed): 133886717
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Entry
133886717 CDS
T10575
Name
(RefSeq) transcription initiation factor TFIID subunit 15b
KO
K13098
RNA-binding protein FUS
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133886717
09122 Translation
03015 mRNA surveillance pathway
133886717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133886717
Spliceosome [BR:
paua03041
]
Complex A
Other components
Complex A specific factors
133886717
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
133886717
NCBI-ProteinID:
XP_062182535
LinkDB
All DBs
Position
1:complement(5311004..5316095)
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AA seq
488 aa
AA seq
DB search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NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtcttacggatccgacgactaccgcggcggcggccgaggtggcggcggaggc
ggccgtgggcgaggaggcggcggtggtggaggagggtatggaagtggtggtggtggaggg
tatgtaggcggagggggaggcggagggtacggcggcggcggcggcgggagaggtggcggc
gggggcggggggttcggtggcggcgggagaggtggaggtggccgagatggtggcggccgc
ggccgcgggggagggcgcgaaggcgactgggtttgccctgacgcgagctgtggcaacgtg
aactttgcgaggaggactgagtgcaacaagtgtggggcaccttgcccaagtggaggtgga
ggtggaggcagtggcggtgggtataacaggtctggtggaggtggtggaggctacaatcgt
ggtggtggtgattatggttctggaggaggtggccacaacagagataggggggatttcaat
tccggtggccgtggtggtagtggaggaggagggggaagaggaggatataatcgaagtggt
ggtattgatcgtggttttgatgactaccgcggtggcagaggtggtggttatgggggacga
gaccaggagaacaaccaaaggggagatgaaggtggttacaatgctggtagctttggacaa
actcctccgcaagggcctccttcctatggtgggcctgctggtgactatgcagcgcctccg
agctcctacggtggcaacaatgcctatggttcagattctgcggtgcctcctcctaatagc
tatggcggtggtccaggctcatacccaccaagctatggtgccccacctccaaacccatat
agtagtggtgccccagggggccaagggggtttgccgcctacatatgatggtgggtacagt
ggtcggtccatgcctgggggtggaggttctgttggtgcaccaccaccttatcatggcagc
ggtggcagttatactggtagtgctgcccctgagccaccttcgaaggttaagcagtgtgat
gcaaactgtgatgagacatgtgataacgcaaggatttacatctcaaacttgcctcctgat
gtcactgttgaggaattacaggagttatttggaggaattggcatggttgggaggatcaaa
caaaaacgtggcttcaaagaccagtggccctggaacataaaaatctatactgacgagtct
ggaaaagccaaaggagatgcttgccttgcttatgaagatccttctgctgctcattcagct
ggtggattctataacaattatgacatgagaggctacaaaatcagtgttgtgatggctgaa
aaatcagcacccagagcaccatcttatggtcatggtggtggtcgtggtggtggctatggt
ggtggacgcagggataatttcagagatggtggtggccatggacctaataggaaccagggt
ggtggtttgcgttcgcgaccgtactaa
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