Phragmites australis (common reed): 133886733
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Entry
133886733 CDS
T10575
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133886733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133886733
03036 Chromosome and associated proteins [BR:
paua03036
]
133886733
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133886733
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133886733
PBAF complex
133886733
GBAF(ncBAF) complex
133886733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
133886733
NCBI-ProteinID:
XP_062182515
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All DBs
Position
12:5349555..5355004
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AA seq
718 aa
AA seq
DB search
MPNGKYGPAVPAAAADGAEGPLEAEVLPSAETVSAFPAAKRRVVNRPHPSVLAAERPACS
AVAPPALENISHGQLQVLSGVLPDHPSLTTDPDGPSLYVCTPPPLMEGHGVPKQFHGRLH
VVPKHSDWFTPGTVHRLERQVVPHFFTGKSPGHTPEKYVLLRNKVIAKYLENPGKRLAFA
ECQGLVGSTGELYDLSRIVRFLDAWGIINYLAAGSVHRGLRMATSLLREEPTGELQLLTA
PLKSIDGLILFDRPKCSLQAEDISSMVSSSSNSELVDFDAAFADLDGKIRERLSESSCSY
CLQPLPSLHYQSQNEADIALCSDCFHDARYIAGHSSLDFQRVDGDNDGSENDSDRWTDEE
TLLLLEGIEKYNNNWDDIAGHVGTKSKAQCIYHFIRLPVEDGLLENVEIPAPMPFREQSN
GYPHSNSNGSASGNPLQSFQHGNQLPFINSSNPVMSVVAFLASAIGPRVAASCAHEALSF
LTRDDDSRVSSEGIHADGRANGANPNFHNHNGASSSVSPENVKQAALCGLSAAAMKSKLF
ADQEEREVQRLAATVINHQLKRLELKLKQFAEVETLLLKECEQVERVRQRISADRVRMRS
ALLGATGSSLPGGSSTMPSNPASINPRPVAVPGSMPQASMSAAYTNSMQGQGQGHPQMPF
LHQRQQMLSLGPRLPLSAIQTQPSAQASNIFNSGTPSSVAPNHHQLLRSSSGNNSSVG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacggtaagtacggccctgccgtccccgccgccgcggcggacggcgccgagggc
cccctcgaggcggaggtgctgccctcggccgagaccgtctccgccttccctgccgccaaa
cgccgcgtggtgaaccgcccgcacccgtccgtcctcgcggccgagcggcctgcgtgttcc
gccgtggcgccgccggcgctagagaacatctcgcacgggcagctgcaggtgctctccggg
gtgcttccggatcacccctccctgactacggaccccgacgggccgtccttgtacgtgtgc
acacctccgcccctaatggaggggcacggcgtgcccaagcagttccatggccgactccat
gtcgtgcccaagcactcagattggtttaccccggggacggtgcataggctggaaaggcag
gtagttccgcacttcttcaccgggaaatctccggggcacactccggagaagtatgttctg
ttaaggaataaagttatcgcgaaatacttggagaacccaggaaagaggcttgcttttgct
gagtgccaggggcttgttgggagcacaggcgaactgtatgacctgagtaggattgttaga
ttcttggacgcttgggggatcatcaattaccttgcggctggatcagtgcaccgcggcctg
aggatggcaacatcgcttctaagggaggaaccaacaggggaattgcaactgcttactgcg
ccattgaaatcaattgatggtctaattttgtttgaccggccaaaatgtagccttcaagca
gaggacatttcttcaatggtgtcatcctcatcgaattcggagcttgtggatttcgatgct
gcgtttgcagacttggatggaaagattagggagcgtttgtcagagagctcttgcagttat
tgcttacagccgttgccaagtttgcattaccagtctcaaaatgaggcagatattgctctg
tgttctgattgcttccatgatgcgagatatattgccgggcattctagcttagatttccag
agagtggatggggataatgatggatcagaaaatgatagtgatagatggactgatgaagaa
acattattgctgttggagggcattgagaagtacaataacaactgggatgacattgcaggg
cacgttggaacaaaatcaaaggcacagtgtatttaccattttattcggcttccagtggag
gatggtttgttagagaatgttgagataccagctcccatgccatttagagaacagagcaat
ggatatccacattcaaattccaatggcagcgcttcaggaaatccacttcaaagttttcaa
catggaaaccagcttccgttcattaattcttctaatccggtcatgtcggtggttgctttt
ttggcctctgcaataggaccaagagttgcagcatcatgcgcacatgaagcattatctttt
ctgacgagagatgatgattccagggtgagttcagaaggcatacatgctgatggtagggcc
aatggtgcaaatccaaattttcacaatcataatggtgcttcgtcatccgtttctccagaa
aatgtgaaacaagctgccttgtgtggtctgtcggcagcagcaatgaagtctaaactcttt
gcggatcaagaggagcgtgaagttcaaagactggctgctaccgtaataaatcatcagttg
aagaggttggagttgaagttgaagcagtttgcggaagttgagaccttgcttttgaaggaa
tgtgagcaagtggaaagggttagacagaggatttcagctgaccgcgtccgaatgagatca
gccctgttaggtgccaccggaagcagtctacctggaggcagtagcaccatgccatccaac
ccagcaagcataaaccccagaccagtggctgtgccaggctctatgcctcaggctagcatg
tcagccgcatacaccaatagcatgcaggggcaggggcaggggcatcctcagatgccgttt
ttgcatcagcggcagcagatgctctcgttgggtcctcgcctgccgctctcagccatccag
actcaaccatccgcgcaggcatcaaacatcttcaactctggcacgcccagttcggttgct
cctaatcaccatcagttgctaagatcgtcatctggaaacaattcaagtgtaggatag
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