Phragmites australis (common reed): 133886826
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Entry
133886826 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133886826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133886826
03009 Ribosome biogenesis [BR:
paua03009
]
133886826
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133886826
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
U1 related factors
133886826
Complex B
133886826
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133886826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
133886826
NCBI-ProteinID:
XP_062182674
LinkDB
All DBs
Position
12:31837381..31844729
Genome browser
AA seq
1355 aa
AA seq
DB search
MAAPEAAAADSLGPRFAPDDPTLPAPWKGLIDGTTLYYWNPETNVTQYEKPAAAAPAPAP
RLPVGPPPTIPTQVPESAPGAFLQPSMQFGQVGQALHQERPGQTGYPQVGQLGQQQQQQP
QQPAQQPPFQHIAQHQASFQQAQQIPYQQQQHQQMPQQPPQYPNTHPQHMPYQHGPYMQP
QQQQPGSQYLCQPDQQPQMSQTAYNQVQQPPMPQAAYNQGQQPPMPQPSYNQGQKPVISQ
SAFNQVQQPQMPHGDYNQGQQPPGIRIPQSQVQHPQQSPGFHQPAQASQLPQVSQSQGLQ
IPLQQGQIQHGLHFTPQHGKQPHHGHMGAQLSQVSHGQQGSLLKDDDVGGHEGKQTGLSV
PLGQQRCQAHLPNQQLPSSHQHPGARTQLNISGVGGPSYPAKHLLGGSSPAQTKNTSFMS
SPAQMHQGGVDTNYQQQSVSSHAVPNHIGPSPVRPPMGFEMGNSEGQFERDDAHSYGRFD
GTNALQQQPKLAALPTSQNSLDMHNGPPYPQPDNFGGYNMEPPYLVPNPHNHGPFPSEAS
MRPPSRMFAPPDLPRIFSADAYRQHHEVTAMGENVPAPFMTFEATGFPPEILREIHTAGF
LNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFIHLRRCQNNPILGPTVLVLAP
TRELASQIQDEALKFGRSSRLSCTCLYGGASKGPQLRELERGADIVVATPGRLNDILEMK
KISLHQVSLLVLDEADRMLDMGFEPQIRKIVDEIPPSRQTLMYTATWPKEITKIAGDLLR
DPVQVNIGSIDELVANKSITQYVEVIPPMDKQRRLEQILREQERGSKIIIFCSTKKMCDQ
LSRGIGRSFGSASIHGDKSQAERDHVLNQFRTGRAPILVATDVAARGLDVKDIRVVINYD
FPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGDLVKVLEGANQQVPPQLRDMVAR
GAPGAPRNQASGMSRWDGPGGGRFEPGAGGPVSYGGIREGPGGFGSREGPGGFGGRESPG
GFGGWEGPDGFGGREGPGGFGGRKGPGGFGGREGPGSSGFGGRGGRGSGGFGGRGGASPG
GFGGRSGRGDSPGFGGRGRGDFSGFGGRGRGDSPGFGGRGRGDFSGGRGGRGRGFGGRGR
SDRGPHDRYVSDGRGRFDGRRGFGDKGRDRSYSRSPDRGRSRGYDRRSDSRSLSRSRSRS
RSWSRSRSRSRSWSRSRSRSSSRSRSRSRSRDHGAGLERRPRARSGFDVLPPSTGAGPAL
TGPGPVPVSVPVPGPAIPPVSTLLPAQSPADTSAMSPMSPGGLVQEAPPLMVGNSGNFGS
AQTDQPFRGTDVAVPSFPAAETFPGPAVQQAAPDV
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccagaggccgccgctgccgattcattgggtcctcggtttgctcctgatgac
ccaacactccctgcgccctggaaaggactaatcgatggcacaacgctgtactactggaac
cctgagacaaatgtgacccagtatgagaagccggccgcagctgcacctgcacctgcacct
cgcttgccggtgggtcctccaccaacgatccctacacaggttccagaatcagcaccaggg
gctttcttgcagcctagcatgcagtttggccaagttgggcaggcgttgcaccaggaacga
cctggccagacaggttatcctcaggttggccagcttgggcaacagcagcagcagcagccg
caacagccagcccagcaaccaccgtttcagcacatagctcaacatcaagcttcctttcag
caagcacaacagataccctatcagcagcagcagcatcagcagatgccgcagcagccacct
caataccccaacacgcatcctcaacacatgccgtaccagcacggtccttatatgcaaccc
cagcagcaacagccaggctcacaatatttatgtcagccagaccagcagccacaaatgtcg
caaactgcctataatcaagttcagcagccaccgatgccgcaagctgcctacaatcaaggt
cagcagccaccaatgccacaaccatcctacaatcaaggtcagaagccagtaatatctcaa
tctgccttcaatcaagttcagcagccacaaatgccgcatggtgattacaatcaaggtcag
caaccgcctggaataaggattcctcagagtcaagtgcaacatcctcaacaatctccgggc
tttcaccaacctgcccaggcttcacaattgccccaagtttctcaatctcaaggacttcaa
ataccccttcaacaaggtcaaatccagcatggcttgcacttcacacctcagcacggaaaa
cagccacaccatggtcatatgggtgcccagctaagccaagtgtcacatgggcaacaaggt
tcattgttgaaggatgatgacgtagggggtcatgaaggtaagcagactggcctttcagta
ccacttggtcagcagcgttgccaagcgcatcttccaaaccagcagttaccttctagtcat
caacatcctggagcccgtactcagctaaatatatctggagttggagggccgtcatatcct
gcaaagcatcttcttggtggatcatctcctgctcagacaaaaaacacgagttttatgagc
tcgcctgcacaaatgcatcaaggcggagtcgatacaaactaccagcaacaatcggttagc
agccatgcagttccaaatcatattggtccgtcaccagttcgacctccaatgggttttgag
atgggtaatagtgagggccagtttgaaagagatgacgctcactcttatggaaggtttgat
ggaacaaatgctctccagcagcagccaaagctcgctgctctcccaacttcacaaaattca
ctggacatgcataatggcccaccgtatcctcagccagacaattttggtggttataacatg
gaacctccatatttagtgccaaatccgcataatcatggtccatttcctagtgaagcttca
atgaggccgccatccagaatgtttgctcccccagatttgcctcgcatcttttcagctgat
gcatatcgtcaacaccatgaagtcactgccatgggtgagaacgttcctgctccatttatg
acatttgaggctactggattccctccagagatcctgagagagatccacacagctggcttc
ttaaatcccactccaattcaagctcaaacatggcctgttgcgctgcaaaaccgggacata
gtagctattgccaagacagggtctgggaagactctggggtacctaattcctgcttttata
catctgagaagatgccaaaacaatccaatattgggccctacagttttggtgttggcccct
acccgtgagcttgcttcacaaatacaagatgaagcattgaagtttggtcgatcatctaga
ctctcctgcacatgcctgtatggtggggcttcaaagggccctcagctaagagaacttgag
cgtggagcagatattgtggtagcaacaccaggacgtcttaatgatatccttgagatgaag
aagattagcctccatcaagtttcattacttgtgcttgatgaagctgaccgcatgcttgac
atgggttttgaaccacagatacggaagattgtggatgagattcctcctagtaggcagact
ctgatgtacactgccacttggccaaaggagattacaaaaattgctggtgatttactgaga
gatcctgtccaggtcaacattggcagcattgatgaacttgttgccaacaaatccatcaca
cagtatgtagaggtgattccgccaatggacaagcagcgacgattagagcagattcttaga
gaacaagaaagaggctcaaaaatcatcatattctgctcaaccaagaaaatgtgcgatcag
ctttctcgtggcattggtcgcagttttggttctgcaagtatccatggtgataaatctcag
gctgaaagagatcatgttctcaatcagttccgaactggcagggctccaatattagtagcc
acagatgttgctgctcgtgggcttgatgtcaaagatatcagagtggtaatcaattatgac
tttccaactgggatcgaggactatgtgcatcgcatagggcgtactggaagggctggggca
actggagtctcatacactttcttctctgaacaagattggaaatatgctggtgatttggtg
aaagtcttggaaggtgctaaccagcaggtccctccacagctgcgagatatggttgcgcga
ggtgcgcctggagctccaagaaaccaggcttctggaatgagccgctgggatggtcctggt
ggcggtcgttttgaacctggtgctggtggccctgttagttatggtggaatcagggagggc
cctggaggctttggcagtcgggaaggcccaggtgggtttggtggtcgggagagccctgga
gggtttggtggctgggagggccctgatggcttcggtggccgggagggtcctggtggcttc
ggtggcaggaagggtccaggtggctttggtggacgtgagggtcctgggtcgagtggtttt
ggaggaagagggggccgaggatctggtggttttggggggagaggtggagcaagccctggt
ggctttggtggtcgtagtggcaggggtgattctcctggttttggtgggcgtggcaggggt
gatttttctggttttggtggacgtggcaggggtgattctcctggttttggtggacgaggt
cggggagatttctctggtggacgtggtgggagggggcgtggatttggcggcaggggacgt
tctgaccgaggtccacatgatcggtatgtctcagatggacggggaagatttgatggccgc
agaggatttggtgacaagggtagggataggagctatagccgtagcccagatagaggccgg
tcgcgaggctatgacagaagaagtgatagtaggagccttagtaggagcagaagccgcagc
aggagctggtcacgtagcaggagtcgcagcaggagctggagccgcagccggagccgtagc
agcagccggagtcgcagcaggagcaggagccgtgaccatggtgcaggattggaacgcagg
ccccgggcaagatccggttttgatgtgctgccaccttcgactggagccggacctgcatta
accggacctggacctgtgcctgtgtccgtaccggtaccaggaccagccatacctcctgtt
tctacactcttacctgcacaatcacctgccgatacatctgcaatgtcaccaatgtcgcct
ggtggcctggtccaggaggctccaccgttaatggtggggaacagtggcaactttggcagt
gcacagaccgatcaacctttccgagggactgacgttgcagtacccagttttcctgcagcc
gaaacatttccaggcccggcagttcagcaggcagctcctgatgtataa
DBGET
integrated database retrieval system
