Phragmites australis (common reed): 133886870
Help
Entry
133886870 CDS
T10575
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03030
DNA replication
paua03410
Base excision repair
paua03420
Nucleotide excision repair
paua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133886870
03410 Base excision repair
133886870
03420 Nucleotide excision repair
133886870
03430 Mismatch repair
133886870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paua03032
]
133886870
03400 DNA repair and recombination proteins [BR:
paua03400
]
133886870
DNA replication proteins [BR:
paua03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133886870
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133886870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_22
AAA_30
AAA_19
RCF1-5-like_lid
RuvB_N
AAA_assoc_2
nSTAND3
AAA_5
PTCB-BRCT
BRCT_2
AAA_24
AAA_16
Sigma54_activ_2
RsgA_GTPase
AAA_18
Zeta_toxin
AAA_14
AAA_17
AAA_2
Gp44_lid
RNA_helicase
NTPase_1
Mg_chelatase
AAA_33
TsaE
NPHP3_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
133886870
NCBI-ProteinID:
XP_062182749
LinkDB
All DBs
Position
12:25895764..25906085
Genome browser
AA seq
983 aa
AA seq
DB search
MSSDIRKWFMKSQDKNAASAAAAKPSGAAEMKKPVLSIPEKKPAPLLVPCDHDPSARRRP
SKYFASKTEKDSDVEMADAVMGKSTEKSTAKRKIQKCSNELKDDSKPLPTKKISKDEKDD
DDDFVVPSKKKTPVKPPPSKKPKVESNVEAPGKTMGIDDEEDRMDEDAKTPSKAAGRGRG
GRGAGAAPGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVISGTLDSLE
REEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLNEDGLFDMIRKS
KPAKASVDKHQSNNNSEKLQKSQTKSSPVKVEKRVEASAVDKSMTSKSNVASASTDNQKA
KNVDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDAQFLHSGQKGKGKKQADSGA
KKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKEL
ISNATLNYSDNRSKHPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQ
KLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKECIQAQENAMEELAERVHGDIRMALNHL
QYMSLSQSVVKYDDIKERLNSSAKDEDISPFTAVDKLFGFNGGRLRMDERIDFGMSDPDL
VPLIIQENYINYRPNTIGKDESGVKRMNALACAAESIADGDIVNVQIRRYRQWQLSQAAC
FASSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDVHSHILASRQANL
DRETLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVEVSKFKGHP
NPMDGIQPAVKSALTKAYKQGSSSRVVRAADLINIPGMKKPLKKRVQAILEPVEGSLPEE
NGVVSAEADEEDSSDAENNDELVPGDSKPKLDLQSDKKKGILVQLDLKSNGKSSSAKKPP
AGRSRSSGSGGKAAGGSGGKRRR
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacatcaggaaatggttcatgaagtcgcaggacaagaatgccgcctccgct
gccgcggccaagccttctggggctgcggagatgaagaagccggtgcttagcattccggag
aagaagccggcgcctcttttggtgccctgtgatcatgatccttctgctagaaggaggcca
agcaagtactttgcgtccaaaacagaaaaagactcagatgttgaaatggcagatgccgtc
atgggaaaaagtactgagaagagtacggccaaaagaaaaattcagaaatgcagcaacgaa
ctcaaggatgacagcaagcctttgccaacaaagaaaatctctaaggatgaaaaagatgac
gatgatgactttgtggtaccttcaaaaaagaaaactccagtgaagccaccgccatcgaag
aagcctaaggttgaatctaatgttgaagcccctggaaagactatgggcattgatgatgag
gaggacaggatggatgaagatgccaagaccccttccaaagcagctggaaggggaagggga
ggaagaggagcaggagcagcccctgggggcagagggagaggagggggtgggagaggtttc
atgaattttggtgagaggaaggatcctcctcacaaaggagaaaaggaggtcccagagggt
gccccagactgtttatctggtttgacgtttgtcataagtggtactcttgacagtcttgaa
cgtgaggaagcaactgatctaatcaagcgttatggaggccgtgtgactggctctattagt
aaaaagacaagttacttgttggctgatgaagacattggtggagtgaaatctaacaaagca
aaagacctgggtgtcccattcttgaatgaagatggtttatttgatatgatccggaaatcg
aagcctgcgaaggcttctgtagacaaacatcaaagcaacaacaattctgaaaagctacaa
aaatcacagacaaagagctcgccagttaaagttgaaaaacgagttgaagcaagtgctgtg
gacaaaagtatgacttcaaagagtaatgttgcaagtgcctccactgacaaccaaaaggcc
aagaatgttgaccgtggttccatgcaatggacagaaaagtatcggccaaaagttccaaat
gacatagttggcaaccaatcaatggtcaaacaacttcatgattggttgaaaagttgggac
gcacagttccttcattctggccaaaagggtaagggaaagaagcaggctgatagtggagct
aaaaaggctgtgttgttgagtggacctccaggtattggtaagactacaaccgcaaaagtt
gtcagtcagatgcttggattgcaggccattgaggttaatgcaagcgatagtcgtggtaaa
gcagactccaaaatcgagaagggtgttggggggagtacatcaaattctatcaaagagctt
atcagcaacgcgactctgaattatagtgacaatcgatcaaaacatcctaaagctgtacta
atcatggatgaagttgatggtatgtctgctggagatagaggtggcgttgctgatcttatt
gctagcatcaagatatccaagattcctataatctgcatttgtaatgaccgttatagccaa
aaattgaagagccttgtgaattactgtctgctgctcaacttcagaaaaccaacaaaacaa
cagatgggtaagagattgatggaaattgccaaaaaggaatgtattcaagctcaagagaat
gcaatggaagagcttgcagaaagagtgcatggggatattcgcatggcactaaaccatttg
cagtatatgagcctctcccagtctgtggtcaaatatgatgacataaaagagagacttaat
agcagtgcaaaagatgaagatatttctccttttacagctgttgacaagctgtttggtttc
aatggtgggagattacggatggatgagagaattgattttggcatgagtgatcctgattta
gttcccctgattatccaggaaaattatatcaattatcgacctaacaccattgggaaggat
gaaagtggagttaaaagaatgaatgctcttgcctgtgccgctgagtctatagcagatggt
gatattgttaatgtacaaataagaagatatcgacagtggcagttgtcccaagctgcttgt
tttgcttcatctatagtacctgctgctttgatgcatgggaacagagaaatccttgaagca
ggtgagcggaactttaataggtttggtggatggttgggaaagtactcaaccacgaacaaa
aacataaggctactggaagatgtccatagtcatattcttgcctcccggcaagcaaacttg
gacagggagacattgaggctggattatctaactcttctcttgagacagctgactgacccg
ctgaagacaatgccgaaggatgaagctgttcaaaaagtggtggagtttatggatacctac
tcgttaagccaggaagactttgacacgattgttgaagtatccaaatttaagggtcatcca
aatcctatggatggtattcaacctgctgttaaaagcgccttgacaaaggcatacaaacaa
ggaagtagttctcgtgttgttcgagcagcagatctaataaatattccaggaatgaaaaaa
cctttgaagaaacgagtacaagcaatcttggagccagttgaaggtagtctgcctgaagaa
aatggagtagtatcagctgaagctgatgaagaagattcttcggatgctgaaaataatgat
gaacttgtgcctggtgactcgaagccgaaactggacctgcagagtgataagaagaaagga
attctagtccagctcgatctgaagagcaatggaaaaagctccagtgcaaagaagccccct
gctggcagatcaagatcgtctggatccggtgggaaggctgcgggaggttcaggtgggaag
aggaggcggtaa
DBGET
integrated database retrieval system
