KEGG   Phragmites australis (common reed): 133887377
Entry
133887377         CDS       T10575                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like isoform X1
  KO
K14962  COMPASS component SWD2
Organism
paua  Phragmites australis (common reed)
Pathway
paua03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    133887377
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133887377
   03036 Chromosome and associated proteins [BR:paua03036]
    133887377
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     133887377
Chromosome and associated proteins [BR:paua03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     133887377
    COMPASS/SET1 complex (yeast)
     133887377
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR3_2nd WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_SPT8 WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_NOL10_N Beta-prop_EML PAC11 Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_NUP159_NUP214 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_DCAF12 PQQ_2 PD40 Beta-prop_WDR35_TULP_N DUF4934 BBS2_Mid
Other DBs
NCBI-GeneID: 133887377
NCBI-ProteinID: XP_062183293
LinkDB
Position
12:complement(12669502..12674967)
AA seq 329 aa
MAGASPPTVSMEVTDEMLKSMEVGLAFRDYNGRISSMDFHSKATNYLVTASDDESIRLYD
IQNAVCLKTINSKKYGVELVCFTDNPTLVLYSSKNGWDESLRLLSLNDNRFVRYFKGHLD
RVVSISLCSEKEVFLSGSLDRTVLLWDLRADKAQGSLRVQGRPAVSYDDQGLVFAVAYGG
HVRMFDARKFEKGPFDIFSVGNDDSEAHVIKFSSDGRRLLLTTKAGRVHVLDSFHGNNIA
TYNVKPVLTNSTLEATFSPDGNHIISGSGDGSVYAWNVRSGKVAHWGSTDNEPPLVRWAP
GSLMFLTGSSELSCWVPDLSKLGSFAVTK
NT seq 990 nt   +upstreamnt  +downstreamnt
atggctggggcgagccctcccactgtgtccatggaggtcaccgacgagatgctcaagagc
atggaggtcggcctggcctttcgagactacaacggcagaattagttctatggattttcac
agcaaggccacaaactatctcgtgacagccagcgatgatgaatcaatccgtctatacgac
attcaaaatgcagtatgtttgaagactattaatagcaaaaaatatggggttgaacttgta
tgcttcactgataacccaactcttgtcttatattcgtcaaaaaatggctgggatgaatcc
ctgcgtctactttcactgaatgataaccggtttgttagatattttaagggccatcttgac
agggtcgtgtctatctcattatgctctgagaaagaagtttttctctctggttcacttgat
cgaaccgtcctcttatgggatctgcgggctgacaaagcacagggctcactgcgtgtgcaa
gggaggcctgcagtttcgtatgatgatcagggtttggtttttgcagtcgcatatggtggt
cacgtacggatgtttgatgcgcgaaaatttgaaaaggggccttttgatatcttctctgtt
ggtaatgatgattcagaagcccatgtcataaagttcagcagtgatggcaggcggcttctg
ttaaccaccaaagctggccgtgttcatgtgctagattcatttcatggcaacaatatagca
acatacaatgttaagccagtgctaaccaattcaacactggaggcaacatttagccctgac
ggaaaccatatcatatctggctctggtgacggtagtgtttatgcctggaacgttaggagt
ggaaaggttgcgcactggggaagcacagataatgaaccgccactagtaaggtgggctcca
ggatccttgatgttcttgacaggatcttcagagctgtcctgctgggttccagatctatcc
aagctgggatcctttgccgttactaagtaa

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