KEGG   Phragmites australis (common reed): 133887914
Entry
133887914         CDS       T10575                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like isoform X1
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    133887914
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:paua03021]
    133887914
Enzymes [BR:paua01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     133887914
Transcription machinery [BR:paua03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     133887914
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 133887914
NCBI-ProteinID: XP_062183912
LinkDB
Position
13:29093337..29103039
AA seq 1230 aa
MEEPPKGSGKSPNGSDSDLEPMIMDDNGAGKSYNMDEANWESSIDVDAGQSSMDVDMKGK
SSLGDDVKGKSSFEPHAQAPIDMSLESLEKFCKEASRSFFDEIGLISHQINSYNEFVSHG
LQELFDSLGEVIVEPGYDPSKKGSGGWKHAIVKFGRVKLEKPVFWSGKDEVDIDFKPRHA
RLQNMTYASKMKVEVNIQVYSLEKSDKSKTGNDGFVQKRDLINETHWIYIGRLPVMVRSN
LCLLHNLKESDCLFDSGGYFLVKGMEKIFIAQEQRCLSRIWITDRPCWTVSFMSEIKRQR
IYVKLVESTKSADFSESKIISMSFLYGTMPIWLMFFALGISSDKEAFDVIDMQDCDASVI
NTISATIKESDELCEGFRKSDKARQYVDELIKNSKFPPTEPFDDYVARYLFPGISGNKNK
ALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERRMIQTIQR
DLNSDRDIQELERYLDASIVTNGLNRAFSTGSWCHPYKRNERCSGIVATLRRTNPLQMMS
DLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQPL
IDSFISCGMNKLDEIPTEEVPRMDKIFLNGNWVGSCTDPASFVLRLRCMRRSSLIDPQVE
IKWDKHQKEVRVFSDAGRILRPLLVVENLNKIRKPKGRSYSFQELMQQEIIEFIGVEEEE
DIQCAWGIRHLFGSEGEVISCYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQ
QAIGYSTTNPGIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTFGRKDDFARPEYFNGQN
AIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKAEVDNKEFPRRQKLKEKIDFGK
MESKRGRVDNLDDDGFPYIGASLQTNDIVIGKVSETGEDHSIKLKHTEKGMVQKVLLSAN
DEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTHQGIVPDIVINPHAF
PTRQTPGQLLEAALGKGIALGGTMRYATPFTTASVDVIAEQLHKAGFSRWGAESVLNGRT
GERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDC
LLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIVRCVPGGKKIRGPYCGFCKSSENI
VRINVPYGAKLLYQELFSMGICLKFETEVC
NT seq 3693 nt   +upstreamnt  +downstreamnt
atggaagagccaccaaagggcagtggaaaatctccaaatggttcggattctgacctggag
cctatgataatggatgacaatggagcgggaaaatcatataacatggatgaggcaaactgg
gagtcttctatagatgttgacgcagggcagtcttccatggatgtggatatgaagggaaaa
tcatctcttggtgatgacgttaaaggaaagtcttctttcgagccgcatgcacaagctcca
attgacatgagtttggaaagcctagagaagttttgcaaagaagcatcaaggtcctttttt
gatgaaattggtctgattagccatcagataaattcctataatgagtttgtctcgcatggg
ctccaggagctttttgattcgctgggggaagtgattgttgaacctggttatgatccttca
aagaaaggatcaggtggctggaagcatgccatcgtcaagtttgggagagtgaagcttgaa
aagcctgtattttggtctggcaaagatgaagttgatattgattttaagccgaggcatgca
cgcctccagaatatgacatatgcttccaaaatgaaagtagaagtgaatattcaggtttat
tctttagagaaaagtgacaagtctaaaacggggaatgatggttttgttcaaaaaagagat
ttgattaatgaaactcattggatatatattggccgccttccggttatggtgagatcaaat
ttatgcttgctgcataacctcaaggaaagtgactgcctgttcgattctggtggatacttt
ttggtcaagggaatggagaagatattcattgctcaagagcaaaggtgcctgagcaggatt
tggattactgaccgaccttgctggactgtctcttttatgtctgaaatcaaacgacaacgc
atatatgtaaaactagttgaatctacaaagagtgcagatttcagtgagagcaaaatcatt
tccatgtcctttttgtatgggactatgccaatttggttgatgtttttcgcgttaggcata
tcatcagataaggaagcctttgatgtgatagatatgcaagactgtgatgcttctgttatc
aacacaatatctgcaactattaaagagtctgatgaattgtgtgaaggatttcgtaaatca
gataaagcacgccaatatgttgatgagttgataaaaaattccaaatttcctccaacagag
cccttcgatgactacgttgctagatatctctttcctggtattagtggaaataagaacaaa
gcacttttcttaggttacatggtgaaatgcctgctaatggctttcactgggaagcgtaaa
tgtgataacaaggatgatttccggaacaagaggttggatctggctggtgaattgcttgga
agagaacttcgggcgcatattaggcatgcagagagacgcatgattcagactattcagaga
gatttgaatagtgaccgtgatatacaggagcttgagcgttatctggatgcatcaattgtt
actaatggtctaaaccgtgccttctccactggttcgtggtgccatccctacaaaagaaat
gaacggtgctcaggaattgttgcgactctaaggagaacaaatcctcttcaaatgatgtca
gacttgaggaaaacccgtcagcgggttgcttatgctgggaaagctggtgacgcgagatat
ccgaatccatcctactggggaaagctgtgttttatgtccactcctgatggtgaaaactgt
ggacttgtgaaaaatctggctgttactgctattgttagctctagggtggtgcagcctttg
attgacagcttcatttcttgtggaatgaataagctggatgaaattcctactgaggaggtt
ccaagaatggacaagatctttctgaatggcaactgggtagggtcttgtactgacccagct
tcatttgtcttgcgattaaggtgcatgaggcgcagcagtctgatcgatccacaggttgaa
atcaaatgggacaagcaccaaaaggaagttcgtgtgttttctgatgcagggcgaatcctc
agaccccttcttgtggttgaaaatcttaataaaatcagaaaaccaaagggccgttcatac
tctttccaggaactaatgcaacaagaaataatcgagttcattggtgttgaagaggaggaa
gatatacaatgtgcctggggcatcaggcatttgtttgggagtgaaggagaggtgatatct
tgttatactcattgtgagctggatccttcttttctgctgggattaagttgcggtattatt
ccttttgcaaaccacaattttgctcggagggtactgtaccaatctgaaaaacattcacag
caagctattggatactctacaacaaatcctggcatcagagttgatactctttctcatcaa
ctatattatcctcagagaccccttttcaaaactgttatagctgactgtcttggcagatca
gattatacttttggaagaaaagatgactttgctagaccagaatatttcaatggccaaaat
gcgattgtggcagtcaatgttcatcagggttttaaccaagaggattcactggttatgaat
agggcttctcttgaacgaggtatgtttaggactgagcacctcaggagctacaaggcagaa
gtagacaacaaagaattccccagacgacagaaattgaaggagaaaatagactttggaaaa
atggaaagcaaaagaggtagggtcgacaatcttgatgatgatggctttccctacattggt
gcaagtcttcagaccaatgacattgttatcgggaaagtctcggaaactggagaagaccac
agtattaagctgaagcatactgaaaagggaatggtacaaaaagtattgctttcagcaaat
gatgaaggaaagaattttgctgttgttactctaagacaggttcgatcaccatgccttgga
gataagttttccagcatgcatggccagaaaggtgttgttggctttctagaatctcaggag
aacttcccatttactcaccaaggaatagtcccggatattgtgataaatccacatgccttt
ccaacacggcaaacccctggccagctgcttgaagctgcgttggggaagggaatagccctc
ggaggtacaatgagatatgctacaccattcaccacagcatcagttgatgttatcgcagaa
cagttgcacaaggctggattttcaagatggggagctgaaagtgttctcaatggccgaaca
ggtgaaaggatgcactccttgattttcatgggacctaccttttaccagaggctgattcac
atggccgaagataaggtgaaattccggaacactgggccagtgcatccactcacaaggcag
cctgtcgccgacaggaaaaggtttggcggagttaagtttggagaaatggagcgtgattgc
ctcctcgcccatggggcagctgccaacctccatgagcgactcttcatgctcagtgacttc
tcccagatgcacgtctgccagacatgtgagcgggtggctaatgttatcgtgaggtgtgtc
ccgggagggaaaaagattcggggcccgtactgcggcttctgcaagtcttcagagaacatt
gttaggatcaacgtgccctatggtgcaaagctcctctaccaggagctctttagcatgggg
atatgtcttaaatttgagacggaagtctgttag

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