Phragmites australis (common reed): 133887974
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Entry
133887974 CDS
T10575
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133887974
mRNA cycle factors
P-body specific factors
133887974
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133887974
NCBI-ProteinID:
XP_062184009
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Position
13:complement(18116799..18124306)
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AA seq
499 aa
AA seq
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MKDPAHRTKVVLRRLPPAIGQQAVLDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF
KRSEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDGREGTIMKDPDYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMIYVRQQRVAKSMAQRSGSRL
GRKLAGVVTSRSSPSKRSSEKRRSSTQYVVRDSAKEKPTYILVPKREEHTQRGKNVAGTS
DAISGGASGSAQAVEAKRDKIVLLKGRASVDSNQQSLTPVKNVPPSSSRQDQRHEASGRI
IKTILSNKELRSANPSQHEQESHAFNTEKDKRTPRVLNSRSTVKDQIVENTERSHFDEKP
NHLHGSVPTGEKIERHARNRDRPDRGVWAPRRYDKSASGGGSHASSSEIPLMQSHSGDNF
SQLADGHDDRKTDTRSHGGSRGGPVENGHRHANRRGPPRGPKETEISTSTPDGKNSKRGT
ANYGAHERQVWVQKSSSGS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcacgaaggtggtgctccggcggctgccgccggcgatcggg
cagcaggccgtgctggaccaggtcgacgcgcgcttcgccgggcggtacgactgggcgtgc
ttccgacccggcaatgccagccaaaagaatcataggtattctcgactctaccttaatttt
aagcgctcagaggacgttgttgagtttgctgagttcttcaatgggcatgtgtttgtgaat
gaaaaaggtgctcaatttaaagctcttgtggaatatgcaccgtcgcaacaggtccccaag
tcaaatatcaagaaggatggccgtgaaggaactattatgaaagatccggattacttggag
tttcttgagcttatttcaaagcctactgagcatctgcctagtgctgaaattcagcttgaa
aggaaagaagctgaaagggcagctgctggaaaggaagcacctgttgtgacaccgcttatg
atatacgttcgtcagcaaagggtggccaagagtatggctcagagatctggaagtagactt
ggcagaaaacttgcaggtgttgtaactagcaggtccagtccttctaaaaggtcttctgag
aagcgcagatcctccacgcagtatgttgtacgagacagtgctaaggagaaaccgacttac
atcttagtgccaaagagagaggagcatacacagaggggaaaaaatgttgctggaacttca
gatgccataagtgggggagcatctggatctgctcaagctgttgaggctaaaagggacaaa
attgtccttttgaaaggaagagcaagtgttgattctaatcagcagtcattgacccctgtg
aagaacgtaccaccatcaagttctagacaagatcagcgacacgaggccagtggcagaata
attaagactatactttcaaacaaggaattacgcagtgcaaatccatctcaacatgagcag
gaaagtcatgcgtttaacactgagaaggataagcggacaccacgggttctaaactcgcgc
tccactgtgaaagatcagatagttgaaaatactgagagaagccattttgacgagaaacct
aatcatctccatggctctgtaccgactggtgagaaaattgaaaggcatgctagaaataga
gataggcctgatcgtggtgtatgggcccctcggcgctatgacaagtctgcatctggaggt
ggttcacatgcttcatcatctgagatcccgctaatgcagtcacattctggagataatttc
tctcaattagcagatggtcatgatgacagaaaaacagatacaagaagccatggtggtagt
cgcggcggtcctgtcgaaaatggacataggcatgccaaccgccgtggtcctccacgtggt
ccgaaggaaacagaaatatctactagcacacctgatggaaagaattcaaagaggggcact
gccaactatggtgctcatgagagacaagtatgggttcaaaaatctagttcaggctcgtga
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