Phragmites australis (common reed): 133887977
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Entry
133887977 CDS
T10575
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 3-like isoform X1
KO
K03255
protein TIF31
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
paua03012
]
133887977
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133887977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
eIF3_p135
TPR_10
TPR_NPHP3
CLU_N
TPR_2
PAM2
TPR_9
TPR_8
TPR_MalT
CLU
TPR_1
Motif
Other DBs
NCBI-GeneID:
133887977
NCBI-ProteinID:
XP_062184017
LinkDB
All DBs
Position
13:29300524..29313593
Genome browser
AA seq
1719 aa
AA seq
DB search
MAPKAGRGKGRGGGGGKGDKRKKEEKVVPSVIDVSVVTPYESLVTLKGISTDHVLDVRKL
LGSNVETCHLTNYSLSHVARGQRLEDGVEVVSLKPCTLRIVEEEYATEEQAVAHVRRLLD
IVACTTAFAKHRNGAAKHKPSRHGRPTTPPSPPAPASTGANGGEAAPPISEAHDMAAIRP
PPKLGEFYDFFSFAHLTPPVHFIRRKEANGESQEGGYFEIEVKVCNGKLLHVVASVKGFY
LAGKPHTVCRSLVDLLQQLSSAFANAYEELMKAFVDHNKFGNLPYGFRANTWLIPPTYVD
SATKCPALPVEDGNWGGNGGGSGRDGKYDQRRWAKEFSILARMPCKTEEERVIRDRKAFL
LHNLFVDTAIFRAASMIRRLIDSSMNSTSAQTGPYGSKVLEERIGDMHITVKKDEADTSL
RLKDKVDGVAFCQTGAMDISQRNLLKGLTSDESVVVKDSSTLGVVIVKHCGYTATVKVSG
CIKDCNDGKQTCDTSDNLDGMLNIDVHDHPDGGSNALNVNSLRIPLPRIINPEIAVANQY
PTPKFHADNSARKLARTVLEDSLIKLYSMPCKNPRIIRWELGSSWLQHLQKKDSPVSENG
KGNATNVDKGPAVKGLGKHFEQLRKIKKKGCNIEGSSSEKEESNINCLSMNGMQESDKIS
VDEMNKEADISKLMSEDALFRLKSLGAGLHEKSLEELTKMAHNFYDDTALPKLVADFASL
ELSPVDGRTMTDFMHTRGLNMCSLGRVVELAEKLPHIQSICIHEMVIRSFKHIIQAVIAT
VDDMQNMSAAIAETLNILLGSPRLENDANTDAHSEHNLRLKWVESFLSKRYCWELKDEFS
HLRKFIILRGLCNKVGLELVTRDYDMNSPNPFDKSDIVSIVPVCKHVIYSSIDSRNLLES
SKMALDKGKLDDAVSYGTKALSKIIAVYGPYHRLTANAYSLLAVVLYHTGDFNQATIYQQ
KALDINERELGLDHPETMKSYGDLSVFYYRLQHIEMALKYVNRALYLLQFSCGLSHPNSA
ATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSMMDAYSL
SVQHEQTTLQILQEKLGQDDLRTQDAAAWLEYFESKALEQQEAARRGMPKPDSSIASKGH
LSVSDLLDFISPDQEKKEREMQRKCRRAKNNIRAHHGESVEEKEKFQHDSESPLEAIEDR
FQEEKLDVRPPVVSEENYDVHDEQKQAGVLSPEKYSDEGWQAATLRGRSANVRKKSNHRK
PALTKLVVDHFEDGHTGSVYRTGLQPQTKGDKEDAVSAPSQLSFGSFFETDKLNGDASII
EDKFCNAPAKPERGAKPTGINRPTSIPSKFVSYKDVAVSPPGTILKPNFEQKEAKEKDNG
HDIDLTLSSEEEDRKFTEKEEEKPSDYSSKEVLSSQPDGVSHVETAPDSNSDESPSEPKK
ASGSKLSASAPPFNPGSLVSVSHPYSTMAIYDASAVLQPIPSQAMEILPHAIDTRVPRGP
RSTLYYRTGHAFQRKQGYTHSQSTIVMGSYSPTTMNPHAAEFVPGKNLQQSDVADREPSL
TKPVTDSAEDVVSQAADEVMAETPVTEKPGQVEKVISGKGKENRGKYIMRNSYKTELARQ
ILLGFIVKSVHDSLGSTGAESGGKSSGSDEAGNEQSSNISKNASGRKDFDKQQKAPKVPK
GEKDIEGFTVVSKRRRRQQPFMNPINGLYSQQSICTSVG
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atggcccccaaggccggccgtggcaagggcagggggggcggcggcggcaaaggcgacaag
aggaagaaggaagagaaagttgtgcccagcgtgatagacgtctcggttgtcaccccttat
gaatcccttgtgacactcaaggggatatctacggaccatgtgctggacgtgaggaagttg
ctggggtcgaatgtcgaaacgtgtcacctgacaaactattcactctcccatgtggcacgc
gggcagcggcttgaggacggcgtggaagtcgtgtcgctgaaaccctgcacgctcaggatc
gtggaagaggagtacgcgacggaggagcaagcggtggcgcacgtccgccggctgctggac
atcgtcgcctgcaccaccgcgttcgccaagcaccgcaacggcgccgcaaagcacaagcca
tccaggcacggccgccccacgacgcctccttcaccgcccgcgcccgcctcaaccggggcc
aatggcggcgaggccgcgccgccgatatcggaggcgcacgacatggcggccatccgcccg
ccgccgaagctgggggagttctacgacttcttctccttcgcgcacctcaccccgcccgtc
cactttatcaggaggaaggaggcgaatggcgagtctcaggaaggcggttacttcgaaatc
gaggtgaaggtttgcaacgggaaacttctgcacgtagttgcttcggtaaagggtttctac
ttggcagggaagccacacaccgtatgccgctccctggtggacctgctacagcagctcagc
agtgcatttgctaatgcatatgaggaactgatgaaagcttttgtggatcacaacaagttt
gggaatctgccatatggatttcgtgcgaacacatggcttattcctccaacgtacgttgac
tctgctacaaagtgcccagcactgccagttgaggatgggaattggggtggaaacgggggt
ggcagtggacgcgatggaaaatatgaccaaagacggtgggcaaaagagttttctattttg
gctagaatgccatgcaaaactgaggaagagcgggtgatcagagaccggaaggcttttctt
ttacacaatctgtttgtagatacagcaatttttagagctgcgtcaatgatacggcgactc
attgattcgtctatgaactcaactagcgcacaaactggtccatatggttcgaaagtactt
gaggaacgtatcggggacatgcatataactgtaaagaaggatgaggctgatactagtttg
aggcttaaggacaaagttgatggagttgctttctgtcaaacgggtgctatggatatatca
caaaggaaccttctcaaaggtttaacttctgatgaaagtgttgttgttaaggattcttcg
acactaggagtggtgattgtcaagcattgcggatatacggcaactgtgaaggtttctgga
tgcataaaagactgtaatgatggtaaacagacctgtgatacctctgataatcttgatggg
atgctgaacattgatgtacatgaccatccagatggaggttctaatgccttgaatgttaac
agtctaagaataccactaccgagaattatcaatcctgaaattgctgttgctaaccagtac
cctaccccaaagtttcatgctgataattctgcaaggaaactagcacgtacagtacttgaa
gacagcctgataaagctgtatagcatgccttgcaaaaatcctagaattatcagatgggaa
cttgggtcgtcctggctgcaacacttgcagaaaaaggattctccagtgtctgagaatggt
aaggggaatgcaacaaatgttgacaaagggccagctgtcaaaggtctaggaaagcatttt
gaacagttaaggaagattaaaaagaaaggatgcaatattgaaggttccagctctgagaag
gaagaatctaacattaactgcttgtcgatgaatggtatgcaagaatcagataagatatca
gttgatgaaatgaataaggaggctgatataagcaagctgatgtcagaggatgctttgttt
cgcttgaagagtttgggagctggccttcatgaaaagtcccttgaagagctcaccaagatg
gcccataatttctatgatgataccgcacttccaaagctggtggctgattttgcctccctt
gaactttccccagtggatggaagaaccatgactgatttcatgcatacaaggggacttaat
atgtgctccttaggccgtgtggtagagctagcagagaagctcccacacatccagtccata
tgcatccatgaaatggttattagatcctttaagcacatcattcaagctgttattgcaact
gtggatgacatgcaaaatatgtctgcagctatagctgagactctgaacattttactagga
tctcccagacttgaaaatgatgctaacacagatgcccatagtgaacataatttgcgatta
aaatgggtagagagcttcctttcaaaaagatactgctgggaattgaaagatgaattttca
cacttgcggaaatttatcattctgagagggctttgcaacaaggttggactggagttggtt
accagagactatgatatgaatagccctaacccatttgacaaatctgacattgtcagcatt
gttcctgtatgcaagcatgtgatctactcatctattgacagccgaaacttgctggaatca
tcaaagatggcattggataaaggaaaactcgacgatgctgtcagctatggaacaaaggcc
ttgtccaaaattatagctgtttatggtccataccatcgactgactgctaatgcatacagc
cttcttgctgtagtgctttatcatactggagattttaatcaggcaactatatatcagcaa
aaggcacttgatatcaatgagagggagcttggtcttgaccatccggaaactatgaagagt
tatggggatttatctgtcttctactaccgtctgcagcacattgaaatggctctaaagtat
gtcaaccgtgcactatatttgcttcagttttcttgtgggctttcacacccgaattcagcc
gccacctacataaatgtggctatgatggaagaaggtatgggaaatgttcatgttgctctt
cggtacttgcatgaagccctgaagtgcaacaagagattgctaggagctgatcacatccag
actgctgcaagctaccatgccatagccatagccctttcaatgatggacgcgtactcgcta
agcgtgcagcatgaacaaactaccttgcagatacttcaggagaaactagggcaagatgac
cttcgaactcaggatgctgctgcatggctagagtatttcgagtcaaaagcattagaacaa
caagaggccgctcgacgaggcatgccaaaacctgattcatctattgcaagcaaagggcat
cttagcgtatcagatcttcttgacttcataagcccagatcaggaaaaaaaagagagggag
atgcaaaggaagtgccgacgtgcaaagaacaatatcagagcccatcatggcgaatcagtt
gaagaaaaggagaagttccagcatgactcggaatctcctcttgaagcaatcgaagacaga
tttcaagaagaaaaactggatgtgcgtcctccagtggtatcagaagaaaattacgatgtc
catgatgagcagaagcaagcaggtgttttatcacctgaaaaatattctgacgaagggtgg
caagcagctactttgagagggcgatctgcaaatgtaaggaagaaaagcaatcacaggaag
ccagctctcacgaaattagtggttgatcacttcgaagatggtcatacaggttctgtttat
aggactggtttacagccacaaacaaaaggagataaagaagatgctgtaagcgctcctagc
caactctcttttggtagcttttttgaaaccgacaagttgaatggggatgccagcattatc
gaggataagttttgcaatgctccagctaaaccagaacggggtgcaaagcccacaggaatt
aacaggccaactagcataccttccaagtttgtatcatacaaagatgtggctgtttcgccc
cctggcacaatcttgaaaccaaatttcgagcagaaggaagcaaaggagaaggataatgga
cacgatattgatttaacactatcatccgaggaagaagatagaaagtttacagaaaaagag
gaggaaaagccaagtgattacagcagcaaagaggttctttcaagtcaaccagatggagtc
agtcatgtagaaacagctcctgatagcaacagtgacgaaagcccatcagaacctaagaaa
gcatctggaagcaaactttcagcttcagcacctccattcaatcctgggtcactcgtatca
gtgtcccacccatacagcacaatggcaatatatgatgctagtgctgttcttcagccaata
ccaagccaagcaatggagattctccctcatgccattgatactagagtgcctcgtggtcct
cggtcaaccttgtactatcgtactggacatgccttccaaaggaaacaaggttacacacac
agccagagtactattgtgatgggtagttactcccccacaactatgaatccccatgctgct
gagtttgtgcctggaaaaaacttgcaacaatctgatgtggctgacagagaacctagtctg
actaaacctgtgactgattctgctgaggatgtggtttcacaggccgcggatgaagtaatg
gctgagacgcctgtcacagaaaagccaggtcaagttgagaaagtcatttcaggtaaagga
aaggaaaacagagggaaatatatcatgaggaattcgtacaaaacagaacttgcaaggcaa
attttgctcggtttcattgtgaagtcagtgcacgatagtttaggttccactggagctgaa
tcaggcggaaaatcaagtggatcagatgaagctggtaatgaacagagcagcaacataagt
aagaatgcctctggtcgcaaagattttgataaacaacagaaagcccccaaggtacctaaa
ggtgagaaggatatagagggatttacagtcgtttcgaaacgtagaaggcggcaacagcca
ttcatgaaccccataaatggtctctattcacaacagtctatttgcacttctgtcggttaa
DBGET
integrated database retrieval system
