Phragmites australis (common reed): 133888054
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Entry
133888054 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133888054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133888054
03036 Chromosome and associated proteins [BR:
paua03036
]
133888054
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133888054
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133888054
mRNA degradation factors
5'-3' decay
Decapping complex
133888054
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133888054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
NA-iREase2
TFIIA
Motif
Other DBs
NCBI-GeneID:
133888054
NCBI-ProteinID:
XP_062184143
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All DBs
Position
13:23244024..23250359
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AA seq
493 aa
AA seq
DB search
MDPRARYPPGIGNGRGDNPSYYGRGPPPPQQHHQQPPPPSHAHHQQYVQQQPQPPQHHNQ
QQWLRRNQIAGAAVGASAQRAPPAADGIDSSSQDWKAQLKLPPTDTRYRTEDVTATKGNE
FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK
IDQDKDAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHL
LVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSIEQLIRYLPSNRQVLMFSA
TFPVTVKEFKDKFLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSI
IFCNSVNRVELLAKKITEIGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI
DIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK
PIPPQIDRAIYCQ
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgggcgaggtaccctcccggcatcgggaacggccgcggtgacaaccctagc
tactacggccgcggcccgccgccaccgcagcagcatcaccagcagccgccaccgccttcg
catgcgcaccaccagcagtacgtgcagcagcagccgcagcccccgcagcaccacaaccag
cagcagtggcttcgtcggaaccagatcgctggcgcggccgtgggagccagcgcgcagagg
gcgccgcctgccgctgacggcatcgattcaagttcacaagattggaaggcccaactgaag
cttccacctacagatacacgttacaggacagaggatgttactgcaactaagggaaatgaa
ttcgaagactatttcctgaaacgtgaactacttatggggatatatgagaaaggatttgaa
aggccttctcctatccaagaagaaagcattcctattgcattaactggtagtgacattctt
gcaagagcgaaaaatggaactggcaaaacagctgcattttgtatacctgcactagaaaaa
attgatcaagacaaagatgctattcaagttgtcatattggttcccacaagggagctggct
ttacaaacttcacaagtctgcaaagaacttgggaaacacttgaagattcaagtaatggtc
actactggaggaaccagcctaaaggatgatattattcgtctttatcaacctgttcattta
cttgttgggacacctggtcgcattttggaccttacaaagaaaggcatttgcattctgaag
gattgttcgatgcttataatggatgaggcagacaagcttctttctcctgaattccaacct
tctattgagcagttgattcgataccttccatcgaatcggcaggttttgatgttctcagca
acatttcctgtgactgtcaaggaattcaaggacaaatttctgcctaaaccttatgttatt
aaccttatggatgaacttacgcttaagggaattactcagttctatgcttttgttgaagaa
aggcagaaagttcattgtcttaatactctcttttccaagctgcaaattaaccaatcaata
atattctgtaattctgtaaatcgtgttgaactgttggcaaagaagattacggagattggt
tactcttgcttctacatccatgctaaaatgctgcaagaccatcgtaatagggtttttcat
gatttccgcaatggtgcatgtaggaaccttgtgtgtacagatctttttacaaggggaata
gatatccaagctgtaaatgttgttatcaactttgatttccccaagaactcagaaacatat
cttcacagggttggtagatctgggagatttggccaccttggtctggctgtgaatttgatt
acctatgaggatcgcttcaacttgtatcggattgagcaagaacttggaacagagataaaa
ccaatacctcctcagatagaccgagctatatattgtcaatag
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