Phragmites australis (common reed): 133888057
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Entry
133888057 CDS
T10575
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133888057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133888057
03036 Chromosome and associated proteins [BR:
paua03036
]
133888057
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133888057
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133888057
PBAF complex
133888057
GBAF(ncBAF) complex
133888057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
DUF1192
Motif
Other DBs
NCBI-GeneID:
133888057
NCBI-ProteinID:
XP_062184146
LinkDB
All DBs
Position
13:1700042..1707953
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AA seq
883 aa
AA seq
DB search
MDMEPKPSPPDATPPKRKAKKEASALASASPPPKRQARDRNPVVDLPPPLSRPPTRKSRR
KPAREKAPRRSVKPPPPPDCAAAAPARPSGEQEIEAVLSRGAGVHVVPTFAGWFSWKEIH
PIEKQTLATFFDGKSERRTPNIYLGIRNFIMNKFHFNPQMHLESNDLSELSIGEMDARVE
VLEFLAHWGLVNFHPFPPVGQECKLVESKSNVDTEEKTSLVEKLFQFETVQSYLVPVPNK
VDAVSPAQVASLLFEPTLVEDAITAAESSVEYHCNSCSIDCSRKRYHCRTQADFDLCSDC
YNEGKFDEGMSQADFILMESAKVPGSGGTSWTDQETLLLLEALEIFKANKWDDIAEHVAT
KTKAQCMLYFLQMPILDCFLDGGDFNLTSEKITEQASAEKGTFDVPEKMVVEDNAGGKEN
TDEKTSKTTNADSTETGTKLSDKNVSAKKDTKNSDANDLVASCIVDNSNKSSGSDPGNGE
HASNFVIDVLGSAFEAVGHFLEKEDMGSFAEAGNPVMALAAFLAGLVEHDDAVTSCCSSL
RAISEISPALLLATRHCFILPDPPSDLKNLTFSVSPASTGGEHQKDNDATPNANGTDKDS
NKKEDSALTLRKLNASFTSQKEHQELSNTKGSCVEIPQVEANTNSTKDFDNPTDMVENSS
ASDKMRDECDSISHSVTSNNTNEPSSIASQEASAASTEDTTGPERVEGDKLSSEELPADV
SPSQGKVETKKIEHAASSSVQHHESNQTETSNTEEPNSNKNIAADGGSIIRLQRAAGTAI
SAAAVKAKLLVEQEEDHIRRLAALVIKKQFQKVEAKMSFFAELEHLVLRARELTKKIRKK
LLMERIAIIAARMAAVSSRPNQHGAPGARLPVGYAVSQQLRRP
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggacatggagcccaaaccctcgccgcccgacgccaccccgcccaagcgcaaggcgaag
aaggaggcatccgcgcttgcctcggcgtccccgccgccgaagcggcaggcccgggaccgc
aaccctgtcgtcgacctcccgccaccgctcagccggccgcccacccgcaagtcgcgccgc
aagcccgcgcgcgagaaagcgccgcggcgctccgtgaagccgcctcctcctcctgattgc
gctgcggcggcgccggcgcggccatcgggggagcaggagatcgaggccgtcctgtcccgc
ggcgccggcgtccacgtcgtccccaccttcgccggatggttttcgtggaaggagattcac
ccaattgagaaacaaacattggctacattttttgatggaaaatcagagaggcggacaccc
aatatatacttgggaattagaaattttatcatgaataaatttcactttaatcctcaaatg
catttggagtccaatgatttgtctgagttgtcaattggcgagatggatgctcgcgttgaa
gtcttggagttcttggcccactggggcttggtcaatttccacccttttccaccagttgga
caggaatgcaagctggttgagagcaaaagcaatgttgatacagaggagaaaacttctctg
gttgagaagttatttcagtttgaaacagttcagtcatatctggtacctgttcccaataaa
gtagatgccgtatctccagctcaggttgctagcttgctttttgagcctaccctagttgaa
gatgcgatcactgcagctgagtcttctgttgagtatcattgcaactcctgctcaattgat
tgctcaagaaagcgctaccattgcagaactcaggcagactttgatttgtgttctgattgc
tacaatgaagggaagtttgatgaaggcatgtcacaagctgatttcatccttatggaatct
gcgaaagttccaggctctggtggtactagctggactgaccaggagacattgcttcttttg
gaagcattagaaatttttaaagcaaataaatgggatgacattgctgagcatgttgcaaca
aaaaccaaagcacagtgcatgctatacttcctccaaatgccaattctggactgctttcta
gatggtggagatttcaatctaacatctgagaagatcacagaacaggcttcagcagaaaag
ggcacttttgatgtacctgagaaaatggtagtagaagacaatgcaggaggaaaagaaaac
actgatgaaaaaacttccaagacaacaaatgctgattctacagaaacaggaacaaaatta
tccgataaaaatgtttctgcaaaaaaagataccaagaattcagatgctaatgatctagtt
gcatcttgcattgttgataattcaaacaaatcgtcaggttctgaccctggaaatggggaa
catgcttccaactttgttattgatgtcctgggatctgcttttgaagctgttggtcacttt
ctggagaaagaagacatgggttcatttgctgaagcaggaaaccctgtgatggcactagca
gcatttttggctggtcttgtggaacatgacgatgctgttacttcatgttgtagttcattg
agagctatatcagagatatctcctgcccttctactggcaactaggcactgttttattctt
ccagatccaccaagtgacctcaaaaatctaactttcagtgtcagccctgcaagcacaggt
ggtgagcaccaaaaagacaatgatgcgactccaaatgcaaatggtactgataaagacagc
aataagaaggaagatagtgctttaactttgagaaagctgaatgcttcattcacttcacag
aaagagcaccaggaattatcgaacacaaagggatcatgtgttgaaattccccaagtggag
gccaacaccaacagtactaaggattttgataatccaactgatatggtagagaatagtagt
gcatctgataagatgagagatgagtgtgattccatttcacattctgttacttcaaataat
acaaatgaacctagttccatagcgtcccaagaagccagtgcagcaagtacagaggacact
actggcccggaacgagtagaaggggacaaactgagttctgaagaattaccagctgatgtt
tcaccttcacaaggaaaggtagagacaaagaagattgaacatgcggcctcgtctagcgta
caacaccacgagtccaaccaaacagaaactagcaatactgaagaacctaacagcaataag
aacattgctgccgacggtggttccatcataaggctacagcgagcggcaggtactgccatt
tcagcagctgcggtgaaagctaagctcctcgtggagcaggaggaggatcatattcgacga
ctagctgcacttgtaatcaaaaagcagtttcagaaggtggaagctaaaatgtcgtttttc
gctgaacttgaacatttggttttgcgagcgagagaattaaccaaaaaaatccggaagaag
cttctgatggagcggattgcgataattgctgcccggatggctgcagtgtcatccaggcca
aaccaacatggggctcctggagctagattaccagtaggctatgctgtgagtcagcagctt
aggcggccttga
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