Phragmites australis (common reed): 133888066
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Entry
133888066 CDS
T10575
Name
(RefSeq) CRM-domain containing factor CFM2, chloroplastic
KO
K27708
CRM-domain containing factor CFM, chloroplastic
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133888066
Spliceosome [BR:
paua03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133888066
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRS1_YhbY
Motif
Other DBs
NCBI-GeneID:
133888066
NCBI-ProteinID:
XP_062184158
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All DBs
Position
13:complement(19626939..19633146)
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AA seq
1057 aa
AA seq
DB search
MLLLFSPRPSPLILSLPSSSTSKPHARLRPVHASASPSPELLGKSALRRISDKLRSLGYL
ETTPETPSPGPIPSASSAAASSSPGEIFVPTPAQLPRHRVGSTLDPSWATGDGEADSAAR
RRRRRGRDAGSASAPPSAAELALPRDELRRLQGIGIRIRKRLKVGKAGVTEGIVNGIHER
WRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYKYPYFHYSES
RDGTLDEESSEQSSSGDEDEDLGIALVEQSINGEEDENHLQHYSSHKESSENPVIAYAEQ
RGGVEDGMGYSEQKGSREKDTKHPILSTKQLVFYMHERNLDIRTTEQNSIQAPNKQHEGS
HISTHVDCPSKDGARARSSLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWG
YDPLPVDADLLPAIVPGFRRPFRLLPSGVPPKLTDREMTILRRLAQPLPYHYALGRGSNL
QGLAVSMIKLWERCEVAKVAIKRDAQNIDSILISEELKGLTGGTLLSRDKESIVFYRGKD
FLPPAVSLAIEKRRKHGSSTIHKPKPNIEGNTLIQDASQLKMSSDVSVHMHEEETSVTDS
RAESLNTVAQNVETRLSQAIAEKEKAEKLLEELEKASQPSKAETREAISEEERYMLRKVG
LKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRIEDVEYAARMLEVESGGILV
AVERVSKGHAIIVYRGKNYQRPSTLRPKTLLSKRDALKRSMEYQRCKSLKLHVLNLSKNI
DYLKDQMNSSYYNKGMHDLSVNSGTLQQKNEELPEVAPENFESEVEECASVETNRTVTLT
RSGVPLDDMQSKVCFNKLKESSSVTASPCLTGSSNAVSFNDLIRHQNQHSSIVAFNLDSH
SEDNSKDVDGPKLDVESAPHLPFRATPLSNQERLVLRKQALKMKKRPVLSIGRNNVITGV
AKTIRTHFMKHPLAIVNIKNRADGTPIQQLISELEEATGSVLVSREINKVILYRGWGAEV
AQKSSKENSTNEEKEVISPQLLEAIRLECGLLPGESE
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgctcctcctcttctccccacgcccttcccctctcatcctctccctcccctcctcctcc
acctccaaaccccacgcccgcctccgtcctgtccacgcctccgcctccccgtcgccggag
ctcctcggaaaatccgcgctccgccgcatctccgacaagctccgcagcctcggttacctc
gagaccacccccgagaccccctctccgggcccgatcccaagcgcgagctcggcggctgcc
tcctcctcccccggcgagatcttcgtgcccaccccggcccagctcccgcgccaccgtgtc
ggctccaccctagacccgagctgggccacgggcgacggcgaggccgactccgcggcgcgg
cggaggaggaggcgtgggagggatgcaggttcagcttcggcgccgccgtccgcggcggag
ctggcgctgccgcgggacgagctgcggcggctgcaggggatcgggatccggataaggaag
aggctcaaggtcgggaaggcgggagtgacggaggggattgtgaacgggatacacgagcgg
tggcggaacgcggaggtcgtgaagctcaggtgcgaggacgtctgggccatgaacatgagg
cgcacgcacgagatcctcgagaggaaaactggaggcttagtcatttggagatctggaagc
accatcatattgtatagaggaaccaactataagtatccttacttccattacagtgaaagt
agggatggtactcttgacgaagaatcatcagagcagagcagttcgggggatgaggatgaa
gatcttggtatagcattagtggaacagagtatcaatggagaagaggatgagaatcattta
caacattatagcagtcataaagagagtagtgagaatcctgttatagcatatgcagaacag
aggggtggagtagaggatggcatgggatattcagaacagaagggaagcagagagaaagat
acaaaacatcccatactatctactaaacagcttgttttttatatgcatgagcggaattta
gacattagaactacagagcaaaacagtattcaagctccaaacaaacagcatgagggatcg
catataagcacccatgtagattgtcctagtaaggatggtgctcgagctcggtcatcctta
gtggctggtgttggttctccgaataagtttcgattacagttgcctggggaggtcaaactt
gcagaggaagctgacaaattacttgatggattgggtccaaggttttctgattggtggggg
tatgacccccttccagtggatgctgatttattaccagctatcgttccaggattccgtagg
ccttttcgtcttcttccttcaggcgtgccaccgaagttaacagacagggaaatgactatc
cttaggagactagctcagcccttaccctaccactatgcacttggaagaggcagtaacctt
caaggattggctgtatctatgatcaagctatgggaaagatgcgaggtagcgaaggttgca
atcaagagagatgcacagaacattgacagcattctcatctctgaggaattgaagggattg
acaggtggaaccctattatcaagagataaagagtcaattgtattctacagagggaaagat
ttcctccccccagctgtctctcttgcaatagaaaagcgcagaaagcatggcagttctact
atccacaagcccaagcctaacattgaaggaaacacacttattcaagatgcttctcaactg
aagatgtcaagtgatgtctcagtacacatgcatgaagaggaaacttctgtcacagatagt
agagcagaatctctgaatacggttgcccagaatgttgagacaagattatctcaggccata
gcagagaaagagaaggctgaaaaacttcttgaagaactagaaaaggcatctcaaccttca
aaagctgaaactagagaggctatatctgaagaggagaggtatatgctgaggaaagttgga
ttgaagatgaaacaatttcttctgctaggaaggagaggagtttttgatggaactattgaa
aatatgcatcttcattggaagtaccgagaacttgtcaaaattatatgtaaagaacatcgc
attgaagatgttgaatatgcagctcgaatgctagaggtagagagtggtggtattttggtg
gcagtggaaagagtgagcaaaggacatgcaattatagtatatcgaggaaagaactaccag
aggccatcaactctcaggccaaaaactttgttgagtaaaagagatgctttgaagcgttcc
atggagtaccaacgatgtaagtccctgaagcttcatgtgcttaatctgtcaaagaatatt
gactacttgaaggatcagatgaattccagctactataacaaaggcatgcatgatcttagt
gtcaactccggaacactacagcagaaaaatgaagaattgcctgaagttgctcctgagaat
tttgagtcggaggttgaggagtgcgcttcagttgaaaccaatagaactgtaacattaaca
agatctggagttcctttggatgatatgcagagcaaagtctgtttcaacaagctcaaagaa
agttcttctgtgactgcaagtccatgtctaactgggagttcaaatgcagtttcattcaat
gatctgatcagacatcaaaaccaacatagctctattgtggcgttcaatctggatagtcat
agcgaagataattcaaaagatgtggatgggccaaaattggatgtggagtctgctcctcac
ttgcctttcagggctacaccactctcaaatcaagaaaggcttgtgctaaggaagcaagcg
cttaaaatgaagaaacgaccagtactttccattgggaggaacaatgtcatcacgggagtt
gcaaaaacaataagaacacacttcatgaagcatcctcttgctattgtgaatattaagaac
agagctgatggaactccaattcagcagctgatatcagaactagaggaggcgacaggatcg
gttctagtgtcacgagaaataaacaaagtgattttgtacagaggttggggagcagaagtg
gcccagaaaagctcaaaggaaaacagtacaaatgaagaaaaggaggttatatcacctcag
ctcctggaagccatcagattagaatgtggattgctccctggcgagtcagaatag
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