Phragmites australis (common reed): 133888173
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Entry
133888173 CDS
T10575
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
paua Phragmites australis (common reed)
Pathway
paua04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133888173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
paua04131
]
133888173
Membrane trafficking [BR:
paua04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133888173
Hops complex
133888173
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
zf_RING_Vps8_fungal
zf-RING_5
zf-C3HC4_2
TPR_ELP1
Motif
Other DBs
NCBI-GeneID:
133888173
NCBI-ProteinID:
XP_062184308
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All DBs
Position
13:13791330..13797294
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AA seq
954 aa
AA seq
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MYQWRKFEFFEEKAAGRGGAGAAVPAEIAGRVTCCSGGRGRAAVGCDDGTVGLLDRGFRL
SYGFQAHASSVLFLQQLKQKNVLVTVGDDDQASSQSSAICLKVFDLDKVQEEGSSTASPF
CVQILRIFTDQFPQAKITSFMVLEEAPPILLIAIGLDNGFIYCIKGDIARERITRFKLQV
EADGSTSLPITGLGFRVEGQAHQLFAVTPSSVSLFSLHVQPPRRQTLDQIGCQTNAVAMS
DRMDLIVGRPEAVYFFEVDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRTQKNSLNVYDL
KNRLIAHSMPVGDVSHLVTEWGYIILIMSDKKIVCIGEKDMESKLDMLFKKNLYTVAINL
VQSQQADPASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNL
TNYLEKLHDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRA
AGYHEHAMFVAKKAGRHELYLKILLEDLGRYDEALQYISGLEANQAGLTVKEYGKILVEH
RPAETVEILLRLCTDGGDPMTRRGSNSMHLLTIPSPMDFVNIFVHSPQYLMGFLENYVKA
VKHSPAQTEIHNTLLELYISNDLSFPSISQENGFENHNIKETKGKETANGYKSGTREIAD
LGKEDTKMAKNIADKQRKGLALLKSAWTSGMEDPLYDVDLALIICNTNAFKDGLLFLYEK
LKLYKEVISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFGELGEDCSKEVKEV
LTYIEKEDVVSPIVVLQTLSKNPCLTLSVVKDYIARKLEQESKLIEDDRKSIDKYQEETE
LMKREIEDLKTNAKVFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECATEY
RSVMEAKQKLEQNARDHDLFFRQLRGSKDGFSVIADYFSKGIVSKTTIPPENGR
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggcgcaagttcgagttcttcgaggagaaggcggccggccgtggcggcgct
ggggccgccgtgccggccgagatcgcaggccgcgtgacctgctgctccggcggccgcggc
cgcgccgcggtggggtgcgacgacggcaccgtggggctcctcgaccgcgggttccgcctc
tcctacggcttccaggcacacgcctcctccgtcctcttcctccagcagctcaagcaaaaa
aatgttctagtcacggttggagatgatgatcaggcatcttcacagtcatcagcaatctgt
cttaaagtattcgaccttgataaagtacaagaagagggatcaagtacagcaagtccgttc
tgtgttcaaattttgcggatcttcactgaccaattccctcaggcaaagattacatcattt
atggttcttgaagaagcgccacctatactgttgattgccattgggttggacaatggtttc
atttattgcatcaaaggtgacattgcacgtgagcgtattacacgcttcaagttgcaagtt
gaagcagatggcagcactagtttacctattactggtcttggtttccgagttgaagggcaa
gcgcatcagctctttgctgtaactcctagttctgtatccttgttcagcctgcatgtacaa
ccaccgaggaggcaaacacttgatcagattggttgtcagaccaatgctgtggcaatgagt
gaccgtatggatctgattgttggtagacctgaagctgtttatttctttgaagttgatggt
agaggcccttgctgggcctttgatggtgagaaaaagtttgtaggttggtttcgaggctat
ttactttgcattattgaagatcagaggacccagaagaactctcttaacgtttatgatctt
aagaatcggctgattgcacatagcatgcctgtgggggatgtttcacacttggtcactgag
tggggttatattattctcataatgagcgataaaaagattgtttgcattggagagaaggac
atggaaagtaagcttgatatgttgttcaagaaaaatctatatacagttgccatcaatctt
gttcaaagtcagcaggcagatcctgcttcgactgctgaggtgctgcggaaatatggtgac
catctgtatggaaaacaggaatatgatgaggctatgtcccagtatattcacactattggt
catcttgaaccgtcatatgttatacaaaagtttcttgatgcgaagcgtatctacaacctg
acaaattatttagagaagttacatgatagagggttagcatccaaagaccacaccaccctt
ctgttgaactgctataccaaattgaaggatgtggagaaacttaaccattttatcaaagat
gaagacggggtaggtgaaatcaagtttgatgtggaaactgccattagagtatgtcgtgca
gctggatatcatgaacatgctatgtttgtggcgaaaaaggccgggaggcatgagttgtat
ttgaagattttacttgaggatcttggtagatatgatgaggcactgcaatatatatctggc
ctggaagcaaatcaagcaggtcttactgtaaaagaatatgggaaaattcttgtggagcat
agacctgctgaaacagttgaaatactgttaaggctctgtactgatggtggagatccaatg
acgagaagaggttcaaatagcatgcacttgcttacgataccttcaccaatggactttgtg
aatatatttgtgcacagcccacaatatctgatgggatttctagaaaattatgtcaaagca
gtcaagcactcacctgctcaaacagaaattcataacacccttctggaactttatatatca
aatgatttaagcttcccatctatctcacaagaaaatggctttgaaaatcacaatatcaaa
gaaacaaaaggtaaagaaaccgcaaatggttataaatcaggcacaagggaaatagcggat
cttggaaaagaagataccaaaatggcaaagaacattgctgataagcagaggaaagggctt
gcattgctgaagtctgcttggacatctgggatggaagatcctttgtatgatgttgatctt
gctcttataatttgtaatacaaatgcgttcaaagatggattgctctttctttatgagaaa
ctaaaactttacaaagaagttattagttgttacaagcaagctcatgatcatgaaggttta
attgcatgctgtaagaagctgggggactcatctcaaggaggtgatccatctctctggggt
gatctgttgaaatattttggtgagctcggggaggattgctctaaagaagttaaagaggtc
ttgacttacattgagaaggaggatgttgtatctcccatagttgtgctacagacactatcg
aaaaacccatgcttgacgctctcagttgtcaaggattacattgctcgcaaacttgaacaa
gaatcaaaactgattgaagatgatagaaaatctattgacaagtaccaggaggagacggaa
ttgatgaaaagggagatagaagatctcaagacaaacgcgaaggtttttcaacttagcaag
tgtacagcgtgcactttcacccttgatcttcccgctgtccatttcatgtgcatgcactca
ttccaccttcgctgccttggggacaatgagaaagaatgcccggaatgcgcaactgaatat
agatctgttatggaggcaaagcagaagctagaacaaaatgctagggaccatgatctattt
ttcaggcagttgaggggttcgaaagatggcttttctgtcatcgcagactattttagcaaa
ggcatagtgagtaagacaaccataccgcctgagaatggccgatag
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