Phragmites australis (common reed): 133888200
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Entry
133888200 CDS
T10575
Name
(RefSeq) SWI/SNF complex subunit SWI3A homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133888200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133888200
03036 Chromosome and associated proteins [BR:
paua03036
]
133888200
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133888200
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133888200
PBAF complex
133888200
GBAF(ncBAF) complex
133888200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SURF2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
CCDC138_C
Motif
Other DBs
NCBI-GeneID:
133888200
NCBI-ProteinID:
XP_062184335
LinkDB
All DBs
Position
13:20378830..20386031
Genome browser
AA seq
781 aa
AA seq
DB search
MSPPAAGTAATSGEAPPPSPRELYTIPASSGWFRWDGIHETERQALPEFFGGVGGAGFGT
ATRNPRIYREYRDFIIGKYREDPARRLTFTEVRRALVGDVTLLRKLFAFLDASGLINFSA
TSSCPAGQQQEAGVVVEAPVGLQVTPRPPASYFAEEKRGRGGENGFRLPPLTSYSDVFGE
WAPGKAPICGYCGEGCNYGEFETMEDGVKVCFKCSKTNNDNKEKAIKCAGDKKESADNHA
SSSWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTINGKSV
SGLHMNQTTDGKMNQHIMKESSSQSTELADGMQIDGDEDSADKSAEEHPTKRKRLFPSMD
ATTSLMEQLALLTTATSPDVLAAAADAAIKALGNENPQAKKAFHLSEREYKNKAFSSNHV
QQIDCRVGNQDAEMHVQTVTDKKQTKQFIATAYQVRAAVATAIGVAAARAKMLADQEERE
MELLMASIIETQLRKIQYKIKHFEELELIMEQEYTTIQQIKGSLIDEWLKVLEQAFQSGV
SLPRDEVLMKLFLNKTTGHELPEREKEAYARSRACRLALIDHAVARKKPPLNAFMPHTEH
KSKLVCNITGDTINKSEEHIWKHINGKRFLSKLEQLEEKMASGEMAEGEATKSNEVVKKS
KSSSKDKKKATVVSPSLPREPKPEMDDSDDADFWVPPVGSRWDDDDGKDRWESSPGKNDA
AENEGAFGGGGGSGGGGDDDMADKDDAESRELASSRAKRMSLEAVGPSSFASRKKKPKKD
Q
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggcggccggcaccgcggctacctccggcgaggcaccgccgccgtcgccg
cgcgagctctacaccatcccggcctcatccggttggttccggtgggacgggatccacgag
acggagcggcaggcgctgccggagttcttcggcggcgtcggcggggccgggttcgggacg
gcgacgcggaacccccggatctaccgcgagtaccgcgacttcatcatcggcaagtaccgg
gaggaccccgctcgccgcctcaccttcaccgaggtccgcagggcgctcgtcggcgacgtc
acgctcctccggaagctcttcgccttcctcgacgcgtccggtctcatcaacttctcggcc
acctcctcctgcccagcggggcagcagcaggaggcgggggtcgtcgtggaagcgcccgtg
gggttgcaggtgacgccgaggccgccggcgtcgtacttcgcggaggagaagcggggcagg
ggcggggagaacgggttccgcctgccgccactgacctcctacagcgatgtgtttggggag
tgggcgcctgggaaggcgcctatatgtgggtattgcggggagggatgcaactatggggag
tttgaaacgatggaggatggtgttaaagtatgtttcaaatgttccaagaccaataatgat
aataaggaaaaagcgattaaatgtgctggtgacaaaaaggagagtgcggacaaccatgct
tccagttcatggacagatgcggagacattactcctattagaaggagtcctaaaacatgga
gatgactgggatctcattgcccagcatgtccgcacaaaaaataaatcagaatgcatagca
aggcttattcagttgccttttggtgaacatatgctcggcacaataaatggtaaatctgtt
agcgggctccacatgaaccaaacaactgatggaaaaatgaaccagcacattatgaaggag
tcttcaagccaatcaactgaactggccgatggcatgcagattgatggagatgaagatagc
gctgataaatctgctgaagaacatcctacaaaacgtaaacggttatttccttcaatggat
gctaccacatcattaatggagcagttagctctgctgactacagcaactagcccagatgtt
cttgctgcagccgctgatgccgcaattaaagcgttgggcaatgaaaacccccaagcgaag
aaagctttccatctcagtgagagagaatacaaaaataaggcgttctcttctaaccatgta
caacagatcgattgcagagttggcaatcaggatgcagaaatgcatgtgcagactgttact
gataagaagcagactaagcagttcattgctactgcatatcaagtgagggcagctgttgct
actgctatcggtgtagctgctgcccgtgctaaaatgcttgcagaccaggaagagcgagaa
atggagctccttatggcgtctataattgaaactcagctaagaaagatacaatacaaaatc
aaacactttgaggagctagagttgatcatggagcaggagtacaccactatacagcaaata
aagggatccctcatcgatgaatggctgaaggtcctggagcaagcatttcagtctggagtg
tcattaccgagagacgaagtgcttatgaagttgttcctaaacaagacgacggggcacgag
ctgccggagcgggagaaggaggcctacgcgcggtcccgcgcctgccgcctcgctctcatc
gaccacgctgtcgcgcgcaagaagccgccgctcaacgccttcatgccccacaccgagcac
aaatcgaagctggtatgcaacatcacgggggatacaataaacaagtcggaggagcacatc
tggaagcacatcaatgggaagagatttcttagcaaactagaacaacttgaagaaaagatg
gcttctggtgagatggctgaaggagaagctacaaagtcaaatgaagtggtgaagaaaagc
aaatcaagcagcaaggacaagaagaaagctactgttgtcagcccttctttgccacgagaa
cctaaaccagagatggatgattcggatgatgcagatttctgggtgcctcctgttggaagt
cgttgggatgatgatgatgggaaagacagatgggagtcctctcctgggaagaacgatgca
gcagagaatgaaggtgcatttggtggtggtggtggtagtggtggtggtggtgatgatgat
atggctgacaaggatgatgctgaatcaagggaacttgcttcaagcagggccaagcgaatg
tcgctagaagcagtagggccgagtagcttcgcttcaaggaagaagaagcccaaaaaggat
cagtga
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