Phragmites australis (common reed): 133888274
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Entry
133888274 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133888274
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133888274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133888274
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133888274
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
133888274
NCBI-ProteinID:
XP_062184436
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Position
13:complement(27873194..27877446)
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AA seq
329 aa
AA seq
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MANLQPSLTIPPSFAGASPPSPSPVAGSSGSIGPALGQAVKDRNKMASAEQLVLDLCDPE
LRENALLELSKKREIFQDLAPLLWHSFGTIAALLQEIVSIYPALSPPTLSAGASNRVCNA
LALLQCVASHPETRILFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTE
VISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVL
ASMVVSLADQPSTRLLKHIIRCYLRLSDNPRACAALQSCLPDMLKDGTFTNCLRDDPATR
RWLQQLLHNVTGGGMGGAPQPGLDHMMGM
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctgcagccttccctcaccatcccgccctcgttcgccggggcctcgccgccg
tcgccgtccccggtggctgggagcagcggcagcatcggacccgcgctgggccaggcggtc
aaggacaggaataagatggcgtcggcggagcagctagtgctggacctctgtgaccccgag
ctgcgcgagaacgcgctcctcgaactctccaagaaaagagagatatttcaagatcttgcc
ccgttgctgtggcactcttttggcacaattgcagcgctactccaggagattgtatcaatc
taccctgcactttcacctccaacattatcagctggcgcatcaaaccgagtctgcaacgca
cttgcgcttcttcagtgtgtcgcatcgcaccctgaaacaaggatccttttcttaaatgct
cacattccactgtacttgtacccgttccttaatactaccagcaaatctagaccttttgag
tacttgcggcttaccagcctgggtgtcatcggtgctcttgtaaaggttgatgatactgaa
gtcatcagttttttgctgcaaactgaaataattcctctgtgcttgcgaaccatggagatg
ggcagtgagctttcaaaaactgtggcaaccttcattgtccaaaagattcttctagatgat
gttgggctgcgctacatttgtgccactgctgagcgtttctttgctgtaggcagtgtttta
gcaagcatggttgtttcacttgctgatcagccctccacaaggttgctgaagcacataatt
cgatgttacctcaggctgtcagataatcccagggcctgtgctgcactgcaaagttgctta
cctgacatgctgaaagatgggacattcactaactgtcttagggatgacccagcaacaagg
cgttggctccaacaactgcttcataatgtgacaggtggaggcatgggaggagctcctcag
ccaggcctggatcacatgatggggatgtga
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