KEGG   Phragmites australis (common reed): 133888404
Entry
133888404         CDS       T10575                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
paua  Phragmites australis (common reed)
Pathway
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133888404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133888404
   03041 Spliceosome [BR:paua03041]
    133888404
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     133888404
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     133888404
Spliceosome [BR:paua03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    133888404
SSDB
Motif
Pfam: RRM_1 RRM_7 SNAPC2 NMB0537_N
Other DBs
NCBI-GeneID: 133888404
NCBI-ProteinID: XP_062184609
LinkDB
Position
13:complement(28985465..28991421)
AA seq 519 aa
MAPKKRKADPAEPAAAAEPASSEPKPRGTIYFPITDDPPEPTAAAEEDEDGAAGDEDEEE
DIGKLLEPLSREQLVALLRTAAEGSPATMAAVRRAAEADPASRKLFVHGLGWGAGADDLR
SAFSRFGELEDCRVISDKQSGKSKGYGFVLFRSRRSALRALRRPQLQIGGRLAFCHLAAS
GPAPPPSQSQNPSSNANTNSNSGTSNNASGTSSSQQPDNMQRKIFVGNVHADVDVDRLYQ
YFSQFGEIEEGPLGFDKTTGKPKGFALFVYKSVESARRALEEPVRNFDGKMLNVQKAIDG
RTKSASGVNANTNSNTTAASAAAAAAAAQMTAPASAAISPYDASAYGATAVPDFGFAQQA
AMLGLGAQQQAFAQPNAAMLAMMAAAMQNPAALGMSPAMLALNPAFAAAALGAGGQQAHT
AGLAGFGAQGFGVGGAAFPNAAGVQGASATYQGAPPGFQGPPGFQSSAGFQVGQPTTQTS
AAAAAAAAAAGAAGYQAGAAGQGQVPGAQIGGTGFQGGY
NT seq 1560 nt   +upstreamnt  +downstreamnt
atggcgccgaagaagcgaaaggccgatccggccgagcccgccgctgccgcggagcccgca
tcctccgagcccaagccccgcggcaccatctacttccccatcaccgacgacccgcccgag
cccacggcagccgccgaggaggacgaggacggggccgccggcgatgaggatgaggaggag
gacatcgggaagctgctggagccgctgtcgcgggagcagctagtggcactgctccgtaca
gccgcggaggggagccccgcgacgatggcggccgtgcggcgcgcggcggaggccgacccc
gcgagcaggaagctgttcgtccacggcctcgggtggggcgccggcgccgacgacctccgc
tccgcgttctcacgcttcggcgagctcgaggactgccgcgtcatctccgacaagcagtcg
ggcaagtctaagggctacgggtttgtgctcttccgttcccgccgctccgcactccgcgct
ctccgccgcccccagctccaaatcggtggtcgtcttgctttctgccacctcgctgcctcg
ggtcccgctcccccgccctcccagtcccagaaccctagctccaacgccaacaccaattcc
aactctggtacttccaataacgcttctggcacctcatcctcacaacaacctgacaatatg
caacgcaagatatttgttggtaacgtgcatgctgatgtggacgtcgaccgcctctatcag
tacttctcgcaattcggtgagattgaggaggggccgttgggctttgacaagaccaccggc
aaacccaagggatttgcattgttcgtttacaagtctgtggagagtgcccgccgtgcattg
gaggagccagtgaggaattttgatggcaagatgctcaatgtgcagaaggctatagatggg
aggaccaagagtgcaagtggggtaaatgcaaacactaattctaataccactgctgcctcc
gcagctgcagcagctgccgccgctcagatgactgctcctgctagtgctgccattagccca
tatgatgcatccgcatatggtgctactgctgttcctgactttgggtttgcacagcaagct
gctatgcttgggttaggtgcacaacagcaggcatttgcacagcccaatgctgcaatgctt
gccatgatggcagcagcgatgcagaatccggctgcactggggatgtcaccagccatgctt
gcactgaaccctgcctttgctgctgctgcactgggtgctgggggccagcaggcacataca
gctggccttgcgggttttggagctcagggatttggtgtaggaggtgccgcttttccaaat
gcagcaggtgttcaaggagcttctgctacatatcaaggtgctcctcctggttttcaaggt
ccacccggattccagagttctgctgggtttcaggttggccaaccaactacccagacaagt
gctgctgctgctgcggccgccgccgccgccggtgctgccggttatcaggctggtgctgct
gggcagggccaagtgcccggtgctcagatagggggcactggttttcagggtggatattga

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