KEGG   Phragmites australis (common reed): 133888439
Entry
133888439         CDS       T10575                                 
Name
(RefSeq) histone deacetylase 9-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03082  ATP-dependent chromatin remodeling
paua03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133888439
   03083 Polycomb repressive complex
    133888439
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:paua03036]
    133888439
Enzymes [BR:paua01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     133888439
Chromosome and associated proteins [BR:paua03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     133888439
   HDAC complexes
    Sin3A-HDAC complex
     133888439
    BRAF-HDAC complex
     133888439
    REST complex
     133888439
    SHIP complex
     133888439
    MiDAC complex
     133888439
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     133888439
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133888439
  Chromatin remodeling factors
   NuRD complex
    133888439
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 133888439
NCBI-ProteinID: XP_062184665
LinkDB
Position
13:16256632..16265875
AA seq 430 aa
MLEKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPTEL
AQFHSADYVEFLHRITPDTQHLYASELTRYNLGEDCPVFDNLFEFCQIYAGGTLDAARRL
NHKTCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDIKDVGEREGKYYAVNIPLKDGIDDASFTRLFKT
IIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPYNDYIEYFAPDYTLKVPNLNMDNYNSKTYLSSIK
VQVMESLRAIQHAPGVQMQEVPPDFFIPDFDEDELDPDERVDQHTQDKQIQRDDEYYEGD
NDNDHDDGVR
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgctggagaaagacaggatatcctacttctacgacggagatgtgggcaatgtctacttt
gggccgaatcaccccatgaagccacatcgtctttgtatgacacatcatcttgttctttca
tatgaacttcataaaaagatggagatatatagaccccacaaagcatacccaacagagctt
gcccagttccattcggctgattatgttgaattcttgcaccggattactcctgacacccag
cacctatatgcaagtgaattaactagatacaatcttggagaagactgcccggtcttcgat
aatttgtttgagttctgccaaatctatgctggaggaactttagacgcagctcgtagattg
aatcataaaacatgtgatattgccattaattgggctggtggactgcatcatgcaaaaaag
tgtgaagcatcaggcttctgctacattaatgatctggttttgggaattctggagcttctc
aagtaccatgccagggttctctatattgacattgatgtccatcatggagatggggttgaa
gaagctttttatttcactgacagggtaatgactgtaagtttccacaagtatggtgatttg
ttctttcctggcacaggtgatattaaggatgtaggagaaagggaaggaaaatattatgcg
gttaacattccactgaaagatgggatagatgacgccagctttactcgactttttaaaaca
attattgccaaggttgtcgaaacgtatctgcccggtgctattgttcttcagtgtggggct
gattcattggcaagggaccgtctaggctgcttcaatctctccattgaaggccatgctgaa
tgtgtaaagtttgtcaagaaattcaatattcctcttctggttactggaggtggtggatac
accaaggagaatgtagcacgctgttgggctgtggaaactggggtccttctagacacggaa
ctcccaaatgagattccatataatgattacatcgagtactttgctccggattatacattg
aaagttccgaatttgaacatggacaactataatagtaagacctatctcagctcaatcaaa
gtgcaagtcatggagagtttgcgggccattcagcatgctcctggcgttcagatgcaagag
gttccacctgatttttttatcccagattttgacgaagatgagctggatcctgatgaacgt
gttgaccagcatacccaagacaagcagattcaacgtgatgatgagtactatgagggtgac
aacgacaacgatcatgatgatggcgtgcgatga

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